Mercurial > repos > devteam > bowtie_wrappers

comparison tool_dependencies.xml @ 0:0c7e4eadfb3c draft

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author devteam
date Mon, 26 Nov 2012 09:43:28 -0500
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children 9ca609a2a421
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-1:000000000000 0:0c7e4eadfb3c
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bowtie" version="0.12.7">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>bowtie</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="move_file">
13 <source>bowtie-build</source>
14 <destination>$INSTALL_DIR/bin</destination>
15 </action>
16 <action type="move_file">
17 <source>bowtie-inspect</source>
18 <destination>$INSTALL_DIR/bin</destination>
19 </action>
20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme>
26 Compiling Bowtie requires libpthread to be present on your system.
27 </readme>
28 </package>
29 </tool_dependency>
30