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comparison bwa.xml @ 20:4f774c1e6049 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 4a306ebd8b7808ce963a69a3b15dd860c1fde585
author iuc
date Thu, 01 Feb 2018 12:35:35 -0500
parents 48f306c57611
children 8d2a528a9513
comparison
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19:dfd8b7f78c37 20:4f774c1e6049
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bwa" name="Map with BWA" version="@VERSION@.3"> 2 <tool id="bwa" name="Map with BWA" version="@VERSION@.4">
3 <description>- map short reads (&lt; 100 bp) against reference genome</description> 3 <description>- map short reads (&lt; 100 bp) against reference genome</description>
4 <macros> 4 <macros>
5 <import>read_group_macros.xml</import> 5 <import>read_group_macros.xml</import>
6 <import>bwa_macros.xml</import> 6 <import>bwa_macros.xml</import>
7 <token name="@command_options@"> 7 <token name="@command_options@">
303 </when> 303 </when>
304 </conditional> 304 </conditional>
305 </inputs> 305 </inputs>
306 <outputs> 306 <outputs>
307 <data format="bam" name="bam_output" label="${tool.name} on ${on_string} (mapped reads in BAM format)"> 307 <data format="bam" name="bam_output" label="${tool.name} on ${on_string} (mapped reads in BAM format)">
308 <expand macro="dbKeyActionsBwa"/> 308 <expand macro="dbKeyActionsBwaMem"/>
309 </data> 309 </data>
310 </outputs> 310 </outputs>
311 <tests> 311 <tests>
312 <test> 312 <test>
313 <param name="reference_source_selector" value="history"/> 313 <param name="reference_source_selector" value="history"/>