Mercurial > repos > devteam > bwa
comparison bwa_macros.xml @ 20:4f774c1e6049 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 4a306ebd8b7808ce963a69a3b15dd860c1fde585
| author | iuc |
|---|---|
| date | Thu, 01 Feb 2018 12:35:35 -0500 |
| parents | dfd8b7f78c37 |
| children | 8d2a528a9513 |
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| 19:dfd8b7f78c37 | 20:4f774c1e6049 |
|---|---|
| 71 <option value="is">IS linear-time algorithm for constructing suffix array. It requires 5.37N memory where N is the size of the database. IS is moderately fast, but does not work with database larger than 2GB</option> | 71 <option value="is">IS linear-time algorithm for constructing suffix array. It requires 5.37N memory where N is the size of the database. IS is moderately fast, but does not work with database larger than 2GB</option> |
| 72 <option value="bwtsw">BWT-SW algorithm. This method works also with big genomes</option> | 72 <option value="bwtsw">BWT-SW algorithm. This method works also with big genomes</option> |
| 73 </param> | 73 </param> |
| 74 </when> | 74 </when> |
| 75 </conditional> | 75 </conditional> |
| 76 </macro> | |
| 77 | |
| 78 <macro name="dbKeyActionsBwa"> | |
| 79 <expand macro="dbKeyActions"> | |
| 80 <option type="from_data_table" name="bwa_indexes" column="1" offset="0"> | |
| 81 <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/> | |
| 82 <filter type="param_value" ref="reference_source.ref_file" column="0"/> | |
| 83 </option> | |
| 84 </expand> | |
| 85 </macro> | 76 </macro> |
| 86 | 77 |
| 87 <macro name="dbKeyActionsBwaMem"> | 78 <macro name="dbKeyActionsBwaMem"> |
| 88 <expand macro="dbKeyActions"> | 79 <expand macro="dbKeyActions"> |
| 89 <option type="from_data_table" name="bwa_mem_indexes" column="1" offset="0"> | 80 <option type="from_data_table" name="bwa_mem_indexes" column="1" offset="0"> |