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comparison bwa_macros.xml @ 12:bd3a1e0de84c draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit 13b3ab10ff1a2e4be39b44f885df6bbe7c23099a
author devteam
date Fri, 30 Dec 2016 08:11:12 -0500
parents 546ada4a9f43
children 4d82cf59895e
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11:546ada4a9f43 12:bd3a1e0de84c
1 <macros> 1 <macros>
2 <import>read_group_macros.xml</import> 2 <import>read_group_macros.xml</import>
3 3
4 <token name="@VERSION@">0.7.12</token> 4 <token name="@VERSION@">0.7.15</token>
5 5
6 <token name="@set_rg_string@"> 6 <token name="@set_rg_string@">
7 #set $rg_string = "@RG\\tID:" + str($rg_id) 7 #set $rg_string = "@RG\\tID:" + str($rg_id)
8 #set $rg_string += $format_read_group("\\tSM:", $rg_sm) 8 #set $rg_string += $format_read_group("\\tSM:", $rg_sm)
9 #set $rg_string += $format_read_group("\\tPL:", $rg_pl) 9 #set $rg_string += $format_read_group("\\tPL:", $rg_pl)
33 ]]></token> 33 ]]></token>
34 34
35 <xml name="requirements"> 35 <xml name="requirements">
36 <requirements> 36 <requirements>
37 <requirement type="package" version="@VERSION@">bwa</requirement> 37 <requirement type="package" version="@VERSION@">bwa</requirement>
38 <requirement type="package" version="1.2">samtools</requirement> 38 <requirement type="package" version="1.3.1">samtools</requirement>
39 </requirements> 39 </requirements>
40 </xml> 40 </xml>
41 41
42 <xml name="stdio"> 42 <xml name="stdio">
43 <stdio> 43 <stdio>
172 172
173 1. https://biostar.usegalaxy.org/ 173 1. https://biostar.usegalaxy.org/
174 2. https://www.biostars.org/ 174 2. https://www.biostars.org/
175 3. https://github.com/lh3/bwa 175 3. https://github.com/lh3/bwa
176 4. http://bio-bwa.sourceforge.net/ 176 4. http://bio-bwa.sourceforge.net/
177 177
178 </token> 178 </token>
179 179
180 <token name="@dataset_collections@"> 180 <token name="@dataset_collections@">
181 ------ 181 ------
182 182
183 **Dataset collections - processing large numbers of datasets at once** 183 **Dataset collections - processing large numbers of datasets at once**
184 184