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comparison bwa.xml @ 7:d8c9597bfb09 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit ddb8bdb9d62399f086b06b3469450d0aad2113bd
author devteam
date Tue, 03 Nov 2015 09:36:45 -0500
parents 09a7281d24c5
children 7bee165c3a44
comparison
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6:09a7281d24c5 7:d8c9597bfb09
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bwa" name="Map with BWA" version="0.3.1"> 2 <tool id="bwa" name="Map with BWA" version="0.4.1">
3 <description>- map short reads (&lt; 100 bp) against reference genome</description> 3 <description>- map short reads (&lt; 100 bp) against reference genome</description>
4 <macros> 4 <macros>
5 <import>read_group_macros.xml</import> 5 <import>read_group_macros.xml</import>
6 <import>bwa_macros.xml</import> 6 <import>bwa_macros.xml</import>
7 <token name="@command_options@"> 7 <token name="@command_options@">
63 <when value="do_not_set"> 63 <when value="do_not_set">
64 <!-- do nothing --> 64 <!-- do nothing -->
65 </when> 65 </when>
66 </xml> 66 </xml>
67 </macros> 67 </macros>
68 68 <expand macro="requirements" />
69 <requirements>
70 <requirement type="package" version="0.7.10.039ea20639">bwa</requirement>
71 <requirement type="package" version="1.1">samtools</requirement>
72 </requirements>
73 <expand macro="stdio" /> 69 <expand macro="stdio" />
74 <command> 70 <command>
75 #set $reference_fasta_filename = "localref.fa" 71 #set $reference_fasta_filename = "localref.fa"
76 72
77 #if str( $reference_source.reference_source_selector ) == "history": 73 #if str( $reference_source.reference_source_selector ) == "history":