Mercurial > repos > devteam > bwa
diff read_group_macros.xml @ 6:09a7281d24c5 draft
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
author | devteam |
---|---|
date | Tue, 21 Jul 2015 14:12:49 -0400 |
parents | fbf460831036 |
children | d8c9597bfb09 |
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--- a/read_group_macros.xml Tue Jul 21 13:51:02 2015 -0400 +++ b/read_group_macros.xml Tue Jul 21 14:12:49 2015 -0400 @@ -2,7 +2,6 @@ <!-- Import this at the top of your command block and then define rg_auto_name. --> <token name="@define_read_group_helpers@"> -#import re #def identifier_or_name($input1) #if hasattr($input1, 'element_identifier') #return $input1.element_identifier @@ -12,6 +11,7 @@ #end def #def clean(name) + #import re #set $name_clean = re.sub('[^\w\-_\.]', '_', $name) #return $name_clean #end def @@ -79,7 +79,7 @@ #if $rg_param('read_group_lb_conditional') is None #set $rg_lb = '' - #elif $rg_param('read_group_lb_conditional')do_auto_name + #elif $rg_param('read_group_lb_conditional').do_auto_name #set $rg_lb = $rg_auto_name #else #set $rg_lb = str($rg_param('read_group_lb_conditional').LB) @@ -147,7 +147,7 @@ </xml> <xml name="read_group_id_param"> <param name="ID" type="text" value="" size="20" label="Read group identifier (ID)" help="This value must be unique among multiple samples in your experiment" optional="false"> - <validator type="empty_field" /> + <validator type="empty_field" /> </param> </xml> <xml name="read_group_id_conditional">