Mercurial > repos > devteam > bwa
diff bwa-mem.xml @ 20:4f774c1e6049 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 4a306ebd8b7808ce963a69a3b15dd860c1fde585
author | iuc |
---|---|
date | Thu, 01 Feb 2018 12:35:35 -0500 |
parents | 48f306c57611 |
children | 8d2a528a9513 |
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--- a/bwa-mem.xml Fri Dec 22 15:03:03 2017 -0500 +++ b/bwa-mem.xml Thu Feb 01 12:35:35 2018 -0500 @@ -7,8 +7,7 @@ </macros> <expand macro="requirements"/> <expand macro="stdio"/> - <command> -<![CDATA[ + <command><![CDATA[ @set_reference_fasta_filename@ ## Begin BWA-MEM command line @@ -107,8 +106,7 @@ #end if | samtools sort -@\${GALAXY_SLOTS:-2} -O bam -o '$bam_output' -]]> - </command> + ]]></command> <inputs> <expand macro="reference_source_conditional" />