Mercurial > repos > devteam > bwa
diff bwa_macros.xml @ 7:d8c9597bfb09 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit ddb8bdb9d62399f086b06b3469450d0aad2113bd
author | devteam |
---|---|
date | Tue, 03 Nov 2015 09:36:45 -0500 |
parents | 09a7281d24c5 |
children | 7bee165c3a44 |
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--- a/bwa_macros.xml Tue Jul 21 14:12:49 2015 -0400 +++ b/bwa_macros.xml Tue Nov 03 09:36:45 2015 -0500 @@ -1,20 +1,27 @@ <macros> <import>read_group_macros.xml</import> <token name="@set_rg_string@"> - #set $rg_string = "@RG\tID:" + str($rg_id) - #set $rg_string += $format_read_group("\tSM:", $rg_sm) - #set $rg_string += $format_read_group("\tPL:", $rg_pl) - #set $rg_string += $format_read_group("\tLB:", $rg_lb) - #set $rg_string += $format_read_group("\tCN:", $rg_cn) - #set $rg_string += $format_read_group("\tDS:", $rg_ds) - #set $rg_string += $format_read_group("\tDT:", $rg_dt) - #set $rg_string += $format_read_group("\tFO:", $rg_fo) - #set $rg_string += $format_read_group("\tKS:", $rg_ks) - #set $rg_string += $format_read_group("\tPG:", $rg_pg) - #set $rg_string += $format_read_group("\tPI:", $rg_pi) - #set $rg_string += $format_read_group("\tPU:", $rg_pu) + #set $rg_string = "@RG\\tID:" + str($rg_id) + #set $rg_string += $format_read_group("\\tSM:", $rg_sm) + #set $rg_string += $format_read_group("\\tPL:", $rg_pl) + #set $rg_string += $format_read_group("\\tLB:", $rg_lb) + #set $rg_string += $format_read_group("\\tCN:", $rg_cn) + #set $rg_string += $format_read_group("\\tDS:", $rg_ds) + #set $rg_string += $format_read_group("\\tDT:", $rg_dt) + #set $rg_string += $format_read_group("\\tFO:", $rg_fo) + #set $rg_string += $format_read_group("\\tKS:", $rg_ks) + #set $rg_string += $format_read_group("\\tPG:", $rg_pg) + #set $rg_string += $format_read_group("\\tPI:", $rg_pi) + #set $rg_string += $format_read_group("\\tPU:", $rg_pu) </token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.7.10.039ea20639">bwa</requirement> + <requirement type="package" version="1.2">samtools</requirement> + </requirements> + </xml> + <xml name="stdio"> <stdio> <exit_code range="1:" />