Mercurial > repos > devteam > bwa
diff read_group_macros.xml @ 7:d8c9597bfb09 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit ddb8bdb9d62399f086b06b3469450d0aad2113bd
author | devteam |
---|---|
date | Tue, 03 Nov 2015 09:36:45 -0500 |
parents | 09a7281d24c5 |
children | ca29c55c78e7 |
line wrap: on
line diff
--- a/read_group_macros.xml Tue Jul 21 14:12:49 2015 -0400 +++ b/read_group_macros.xml Tue Nov 03 09:36:45 2015 -0500 @@ -146,7 +146,7 @@ </when> </xml> <xml name="read_group_id_param"> - <param name="ID" type="text" value="" size="20" label="Read group identifier (ID)" help="This value must be unique among multiple samples in your experiment" optional="false"> + <param name="ID" type="text" value="" label="Read group identifier (ID)" help="This value must be unique among multiple samples in your experiment" optional="false"> <validator type="empty_field" /> </param> </xml> @@ -158,7 +158,7 @@ </conditional> </xml> <xml name="read_group_sm_param"> - <param name="SM" type="text" value="" size="20" label="Read group sample name (SM)" help="This value should be descriptive. Use pool name where a pool is being sequenced" /> + <param name="SM" type="text" value="" label="Read group sample name (SM)" help="This value should be descriptive. Use pool name where a pool is being sequenced" /> </xml> <xml name="read_group_sm_conditional"> <conditional name="read_group_sm_conditional"> @@ -171,7 +171,7 @@ as per Picard. --> <xml name="read_group_sm_param_required"> - <param name="SM" type="text" value="" size="20" label="Read group sample name (SM)" optional="false" help="This value should be descriptive. Use pool name where a pool is being sequenced"> + <param name="SM" type="text" value="" label="Read group sample name (SM)" optional="false" help="This value should be descriptive. Use pool name where a pool is being sequenced"> <validator type="empty_field" /> </param> </xml> @@ -194,7 +194,7 @@ </param> </xml> <xml name="read_group_lb_param"> - <param name="LB" type="text" size="25" label="Library name (LB)" optional="true" /> + <param name="LB" type="text" label="Library name (LB)" optional="true" /> </xml> <xml name="read_group_lb_conditional"> <conditional name="read_group_lb_conditional"> @@ -204,7 +204,7 @@ </conditional> </xml> <xml name="read_group_lb_required_param"> - <param name="LB" type="text" size="25" label="Library name (LB)" optional="false"> + <param name="LB" type="text" label="Library name (LB)" optional="false"> <validator type="empty_field" /> </param> </xml> @@ -216,33 +216,33 @@ </conditional> </xml> <xml name="read_group_cn_param"> - <param name="CN" type="text" size="25" label="Sequencing center that produced the read (CN)" /> + <param name="CN" type="text" label="Sequencing center that produced the read (CN)" /> </xml> <xml name="read_group_ds_param"> - <param name="DS" type="text" size="25" label="Description (DS)" /> + <param name="DS" type="text" label="Description (DS)" /> </xml> <xml name="read_group_dt_param"> - <param name="DT" type="text" size="25" label="Date that run was produced (DT)" help="ISO8601 format date or date/time, like YYYY-MM-DD" /> + <param name="DT" type="text" label="Date that run was produced (DT)" help="ISO8601 format date or date/time, like YYYY-MM-DD" /> </xml> <xml name="read_group_fo_param"> - <param name="FO" type="text" size="25" optional="true" label="Flow order (FO)" help="The array of nucleotide bases that correspond to the nucleotides used for each flow of each read. Multi-base flows are encoded in IUPAC format, and non-nucleotide flows by various other characters. Format: /\*|[ACMGRSVTWYHKDBN]+/"> + <param name="FO" type="text" optional="true" label="Flow order (FO)" help="The array of nucleotide bases that correspond to the nucleotides used for each flow of each read. Multi-base flows are encoded in IUPAC format, and non-nucleotide flows by various other characters. Format: /\*|[ACMGRSVTWYHKDBN]+/"> <validator type="regex" message="Invalid flow order">\*|[ACMGRSVTWYHKDBN]+$</validator> </param> </xml> <xml name="read_group_ks_param"> - <param name="KS" type="text" size="25" label="The array of nucleotide bases that correspond to the key sequence of each read (KS)" /> + <param name="KS" type="text" label="The array of nucleotide bases that correspond to the key sequence of each read (KS)" /> </xml> <xml name="read_group_pg_param"> - <param name="PG" type="text" size="25" label="Programs used for processing the read group (PG)" /> + <param name="PG" type="text" label="Programs used for processing the read group (PG)" /> </xml> <xml name="read_group_pi_param"> <param name="PI" type="integer" optional="true" label="Predicted median insert size (PI)" /> </xml> <xml name="read_group_pu_param"> - <param name="PU" type="text" size="25" label="Platform unit (PU)" help="Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" optional="True" /> + <param name="PU" type="text" label="Platform unit (PU)" help="Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" optional="True" /> </xml> <xml name="read_group_pu_required_param"> - <param name="PU" type="text" size="25" label="Platform unit (PU)" help="Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" optional="False" /> + <param name="PU" type="text" label="Platform unit (PU)" help="Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" optional="False" /> </xml> <!-- Only ID is required - all groups available --> <xml name="read_group_inputs_spec">