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comparison bwa_color_wrapper.xml @ 3:b4427dbb6ced draft default tip

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Convert tool to use $GALAXY_SLOTS if available.
author Nate Coraor <nate@bx.psu.edu>
date Thu, 16 Jan 2014 13:11:51 -0500
parents 150b3fe44caa
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2:24fa4e22021a 3:b4427dbb6ced
4 </requirements> 4 </requirements>
5 <description></description> 5 <description></description>
6 <parallelism method="basic"></parallelism> 6 <parallelism method="basic"></parallelism>
7 <command interpreter="python"> 7 <command interpreter="python">
8 bwa_wrapper.py 8 bwa_wrapper.py
9 --threads="4" 9 --threads="\${GALAXY_SLOTS:-4}"
10 --color-space 10 --color-space
11 11
12 ## reference source 12 ## reference source
13 --fileSource="${genomeSource.refGenomeSource}" 13 --fileSource="${genomeSource.refGenomeSource}"
14 #if $genomeSource.refGenomeSource == "history": 14 #if $genomeSource.refGenomeSource == "history":