# HG changeset patch
# User Nate Coraor <nate@bx.psu.edu>
# Date 1389895911 18000
# Node ID b4427dbb6ced211fb100034533c4e1c67bff061b
# Parent  24fa4e22021aab87e1c38bc4439d1a5e1dd73ebc
Convert tool to use $GALAXY_SLOTS if available.

diff -r 24fa4e22021a -r b4427dbb6ced bwa_color_wrapper.xml
--- a/bwa_color_wrapper.xml	Tue Dec 17 09:20:58 2013 -0500
+++ b/bwa_color_wrapper.xml	Thu Jan 16 13:11:51 2014 -0500
@@ -6,7 +6,7 @@
   <parallelism method="basic"></parallelism>
   <command interpreter="python">
     bwa_wrapper.py 
-      --threads="4"
+      --threads="\${GALAXY_SLOTS:-4}"
       --color-space
 
       ## reference source
diff -r 24fa4e22021a -r b4427dbb6ced bwa_wrapper.xml
--- a/bwa_wrapper.xml	Tue Dec 17 09:20:58 2013 -0500
+++ b/bwa_wrapper.xml	Thu Jan 16 13:11:51 2014 -0500
@@ -6,7 +6,7 @@
   <parallelism method="basic"></parallelism>
   <command interpreter="python">
     bwa_wrapper.py 
-      --threads="4"
+      --threads="\${GALAXY_SLOTS:-4}"
 
       #if $input1.ext == "fastqillumina":
             --illumina1.3