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comparison test-data/peakcalling_ccat/3.0/ccat_test_log_out_1.txt @ 0:a0c8dc671a23 draft

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:27:03 -0500
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-1:000000000000 0:a0c8dc671a23
1 chromosome length information read. chromNum = 49!
2 config file read.
3 fragmentSize = 200
4 isStrandSensitiveMode = 0
5 slidingWinSize = 500
6 movingStep = 50
7 outputNum = 100000
8 minCount = 4
9 minScore = 5.000000
10 bootstrapPass = 50
11 randSeed = 123456
12 reading tag files......
13 10000 tags in L1, 10000 tags in L2.
14 tag file read.
15 pre-processing......
16 pre-processing finished.
17 estimating noise rate......
18 not enough reads for noise rate estimation.
19 noise rate estimation failed. noise rate set to be 1.0
20 noise rate = 1.000000
21 peak-finding......
22 chr1......884 candidate peaks.
23 chr1_random......0 candidate peaks.
24 chr10......0 candidate peaks.
25 chr10_random......0 candidate peaks.
26 chr11......0 candidate peaks.
27 chr11_random......0 candidate peaks.
28 chr12......0 candidate peaks.
29 chr13......0 candidate peaks.
30 chr13_random......0 candidate peaks.
31 chr14......0 candidate peaks.
32 chr15......0 candidate peaks.
33 chr15_random......0 candidate peaks.
34 chr16......0 candidate peaks.
35 chr16_random......0 candidate peaks.
36 chr17......0 candidate peaks.
37 chr17_random......0 candidate peaks.
38 chr18......0 candidate peaks.
39 chr18_random......0 candidate peaks.
40 chr19......0 candidate peaks.
41 chr19_random......0 candidate peaks.
42 chr2......0 candidate peaks.
43 chr2_random......0 candidate peaks.
44 chr20......0 candidate peaks.
45 chr21......0 candidate peaks.
46 chr21_random......0 candidate peaks.
47 chr22......0 candidate peaks.
48 chr22_random......0 candidate peaks.
49 chr22_h2_hap1......0 candidate peaks.
50 chr3......0 candidate peaks.
51 chr3_random......0 candidate peaks.
52 chr4......0 candidate peaks.
53 chr4_random......0 candidate peaks.
54 chr5......0 candidate peaks.
55 chr5_random......0 candidate peaks.
56 chr5_h2_hap1......0 candidate peaks.
57 chr6......0 candidate peaks.
58 chr6_random......0 candidate peaks.
59 chr6_cox_hap1......0 candidate peaks.
60 chr6_qbl_hap2......0 candidate peaks.
61 chr7......0 candidate peaks.
62 chr7_random......0 candidate peaks.
63 chr8......0 candidate peaks.
64 chr8_random......0 candidate peaks.
65 chr9......0 candidate peaks.
66 chr9_random......0 candidate peaks.
67 chrM......0 candidate peaks.
68 chrX......0 candidate peaks.
69 chrX_random......0 candidate peaks.
70 chrY......0 candidate peaks.
71 peak-finding finished.
72 Significance Analysis......
73 estimating paramters......
74 smoothing factor = 0.356298
75 estimating local FDR.....
76 FDR at the threshold 5.000000 is 0.999000. You may want to adjust the threshold by inspecting the output files.
77 post-processing......
78 chr1......finished.
79 chr1_random......finished.
80 chr10......finished.
81 chr10_random......finished.
82 chr11......finished.
83 chr11_random......finished.
84 chr12......finished.
85 chr13......finished.
86 chr13_random......finished.
87 chr14......finished.
88 chr15......finished.
89 chr15_random......finished.
90 chr16......finished.
91 chr16_random......finished.
92 chr17......finished.
93 chr17_random......finished.
94 chr18......finished.
95 chr18_random......finished.
96 chr19......finished.
97 chr19_random......finished.
98 chr2......finished.
99 chr2_random......finished.
100 chr20......finished.
101 chr21......finished.
102 chr21_random......finished.
103 chr22......finished.
104 chr22_random......finished.
105 chr22_h2_hap1......finished.
106 chr3......finished.
107 chr3_random......finished.
108 chr4......finished.
109 chr4_random......finished.
110 chr5......finished.
111 chr5_random......finished.
112 chr5_h2_hap1......finished.
113 chr6......finished.
114 chr6_random......finished.
115 chr6_cox_hap1......finished.
116 chr6_qbl_hap2......finished.
117 chr7......finished.
118 chr7_random......finished.
119 chr8......finished.
120 chr8_random......finished.
121 chr9......finished.
122 chr9_random......finished.
123 chrM......finished.
124 chrX......finished.
125 chrX_random......finished.
126 chrY......finished.
127 post-processing finished.
128 Significance analysis finished.
129 saving results.......
130 results saved.
131 CCAT process completed!