--- a/test-data/peakcalling_ccat/3.0/ccat_test_log_out_1.txt	Tue Jul 21 14:13:34 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,131 +0,0 @@
-chromosome length information read. chromNum = 49!
-config file read.
-fragmentSize = 200
-isStrandSensitiveMode = 0
-slidingWinSize = 500
-movingStep = 50
-outputNum = 100000
-minCount = 4
-minScore = 5.000000
-bootstrapPass = 50
-randSeed = 123456
-reading tag files......
-10000 tags in L1, 10000 tags in L2.
-tag file read.
-pre-processing......
-pre-processing finished.
-estimating noise rate......
-not enough reads for noise rate estimation.
-noise rate estimation failed. noise rate set to be 1.0
-noise rate = 1.000000
-peak-finding......
-chr1......884 candidate peaks.
-chr1_random......0 candidate peaks.
-chr10......0 candidate peaks.
-chr10_random......0 candidate peaks.
-chr11......0 candidate peaks.
-chr11_random......0 candidate peaks.
-chr12......0 candidate peaks.
-chr13......0 candidate peaks.
-chr13_random......0 candidate peaks.
-chr14......0 candidate peaks.
-chr15......0 candidate peaks.
-chr15_random......0 candidate peaks.
-chr16......0 candidate peaks.
-chr16_random......0 candidate peaks.
-chr17......0 candidate peaks.
-chr17_random......0 candidate peaks.
-chr18......0 candidate peaks.
-chr18_random......0 candidate peaks.
-chr19......0 candidate peaks.
-chr19_random......0 candidate peaks.
-chr2......0 candidate peaks.
-chr2_random......0 candidate peaks.
-chr20......0 candidate peaks.
-chr21......0 candidate peaks.
-chr21_random......0 candidate peaks.
-chr22......0 candidate peaks.
-chr22_random......0 candidate peaks.
-chr22_h2_hap1......0 candidate peaks.
-chr3......0 candidate peaks.
-chr3_random......0 candidate peaks.
-chr4......0 candidate peaks.
-chr4_random......0 candidate peaks.
-chr5......0 candidate peaks.
-chr5_random......0 candidate peaks.
-chr5_h2_hap1......0 candidate peaks.
-chr6......0 candidate peaks.
-chr6_random......0 candidate peaks.
-chr6_cox_hap1......0 candidate peaks.
-chr6_qbl_hap2......0 candidate peaks.
-chr7......0 candidate peaks.
-chr7_random......0 candidate peaks.
-chr8......0 candidate peaks.
-chr8_random......0 candidate peaks.
-chr9......0 candidate peaks.
-chr9_random......0 candidate peaks.
-chrM......0 candidate peaks.
-chrX......0 candidate peaks.
-chrX_random......0 candidate peaks.
-chrY......0 candidate peaks.
-peak-finding finished.
-Significance Analysis......
-estimating paramters......
-smoothing factor = 0.356298
-estimating local FDR.....
-FDR at the threshold 5.000000 is 0.999000. You may want to adjust the threshold by inspecting the output files.
-post-processing......
-chr1......finished.
-chr1_random......finished.
-chr10......finished.
-chr10_random......finished.
-chr11......finished.
-chr11_random......finished.
-chr12......finished.
-chr13......finished.
-chr13_random......finished.
-chr14......finished.
-chr15......finished.
-chr15_random......finished.
-chr16......finished.
-chr16_random......finished.
-chr17......finished.
-chr17_random......finished.
-chr18......finished.
-chr18_random......finished.
-chr19......finished.
-chr19_random......finished.
-chr2......finished.
-chr2_random......finished.
-chr20......finished.
-chr21......finished.
-chr21_random......finished.
-chr22......finished.
-chr22_random......finished.
-chr22_h2_hap1......finished.
-chr3......finished.
-chr3_random......finished.
-chr4......finished.
-chr4_random......finished.
-chr5......finished.
-chr5_random......finished.
-chr5_h2_hap1......finished.
-chr6......finished.
-chr6_random......finished.
-chr6_cox_hap1......finished.
-chr6_qbl_hap2......finished.
-chr7......finished.
-chr7_random......finished.
-chr8......finished.
-chr8_random......finished.
-chr9......finished.
-chr9_random......finished.
-chrM......finished.
-chrX......finished.
-chrX_random......finished.
-chrY......finished.
-post-processing finished.
-Significance analysis finished.
-saving results.......
-results saved.
-CCAT process completed!