# HG changeset patch
# User devteam
# Date 1437502414 14400
# Node ID 201d8e7dfc43b3e4125ebbe41688c259ecc79a50
# Parent  a0c8dc671a239f3deeb9eca8cb3a0c2b3abbd237
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty

diff -r a0c8dc671a23 -r 201d8e7dfc43 ccat_wrapper.xml
--- a/ccat_wrapper.xml	Mon Jan 27 09:27:03 2014 -0500
+++ b/ccat_wrapper.xml	Tue Jul 21 14:13:34 2015 -0400
@@ -140,9 +140,10 @@
 
 **Citation**
 
-For the underlying tool, please cite `Xu H, Handoko L, Wei X, Ye C, Sheng J, Wei CL, Lin F, Sung WK. A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics. 2010 May 1;26(9):1199-204. <http://www.ncbi.nlm.nih.gov/pubmed/20371496>`_
-
 If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.*
 
   </help>
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq128</citation>
+  </citations>
 </tool>
diff -r a0c8dc671a23 -r 201d8e7dfc43 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jan 27 09:27:03 2014 -0500
+++ b/tool_dependencies.xml	Tue Jul 21 14:13:34 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="CCAT" version="3.0">
-      <repository changeset_revision="b65b1bab9226" name="package_ccat_3_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="b65b1bab9226" name="package_ccat_3_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>