Mercurial > repos > devteam > change_case
annotate changeCase.xml @ 2:56c90926c8ef draft
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Tue, 21 Jul 2015 14:15:36 -0400 |
| parents | 3970d288ee1f |
| children | ecf91530d461 |
| rev | line source |
|---|---|
|
2
56c90926c8ef
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
1
diff
changeset
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1 <tool id="ChangeCase" name="Change Case" version="1.0.0"> |
| 0 | 2 <description> of selected columns</description> |
| 3 <stdio> | |
| 4 <exit_code range="1:" err_level="fatal" /> | |
| 5 </stdio> | |
|
1
3970d288ee1f
Updated command line format per dev team standards.
Dave B. <dave@bx.psu.edu>
parents:
0
diff
changeset
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6 <command interpreter="perl">changeCase.pl "${input}" "${cols}" "${delimiter}" "${casing}" "${out_file1}"</command> |
| 0 | 7 <inputs> |
| 8 <param name="input" format="txt" type="data" label="From"/> | |
| 9 <param name="cols" size="10" type="text" value="c1,c2" label="Change case of columns"/> | |
| 10 <param name="delimiter" type="select" label="Delimited by"> | |
| 11 <option value="TAB">Tab</option> | |
| 12 <option value="SPACE">Whitespace</option> | |
| 13 <option value="DOT">Dot</option> | |
| 14 <option value="COMMA">Comma</option> | |
| 15 <option value="DASH">Dash</option> | |
| 16 <option value="UNDERSCORE">Underscore</option> | |
| 17 <option value="PIPE">Pipe</option> | |
| 18 </param> | |
| 19 <param name="casing" type="select" label="To"> | |
| 20 <option value="up">Upper case</option> | |
| 21 <option value="lo">Lower case</option> | |
| 22 </param> | |
| 23 </inputs> | |
| 24 <outputs> | |
| 25 <data format="tabular" name="out_file1" /> | |
| 26 </outputs> | |
| 27 <tests> | |
| 28 <test> | |
| 29 <param name="input" value="1.txt" ftype="txt"/> | |
| 30 <param name="cols" value="c1"/> | |
| 31 <param name="delimiter" value="SPACE"/> | |
| 32 <param name="casing" value="up"/> | |
| 33 <output name="out_file1" file="changeCase_out1.tabular"/> | |
| 34 </test> | |
| 35 <test> | |
| 36 <param name="input" value="1.bed" ftype="bed"/> | |
| 37 <param name="cols" value="c1"/> | |
| 38 <param name="delimiter" value="TAB"/> | |
| 39 <param name="casing" value="up"/> | |
| 40 <output name="out_file1" file="changeCase_out2.tabular"/> | |
| 41 </test> | |
| 42 </tests> | |
| 43 <help> | |
| 44 | |
| 45 .. class:: warningmark | |
| 46 | |
| 47 **This tool breaks column assignments.** To re-establish column assignments run the tool and click on the pencil icon in the resulting history item. | |
| 48 | |
| 49 .. class:: warningmark | |
| 50 | |
| 51 The format of the resulting dataset from this tool is always tabular. | |
| 52 | |
| 53 ----- | |
| 54 | |
| 55 **What it does** | |
| 56 | |
| 57 This tool selects specified columns from a dataset and converts the values of those columns to upper or lower case. | |
| 58 | |
| 59 - Columns are specified as **c1**, **c2**, and so on. | |
| 60 - Columns can be specified in any order (e.g., **c2,c1,c6**) | |
| 61 | |
| 62 ----- | |
| 63 | |
| 64 **Example** | |
| 65 | |
| 66 Changing columns 1 and 3 ( delimited by Comma ) to upper case in:: | |
| 67 | |
| 68 apple,is,good | |
| 69 windows,is,bad | |
| 70 | |
| 71 will result in:: | |
| 72 | |
| 73 APPLE is GOOD | |
| 74 WINDOWS is BAD | |
| 75 | |
| 76 </help> | |
| 77 </tool> |