Mercurial > repos > devteam > compute_motif_frequencies_for_all_motifs
comparison test-data/motifs2.tabular @ 0:acc3dc5d26e3 draft
Uploaded tool tarball.
| author | devteam |
|---|---|
| date | Wed, 25 Sep 2013 10:04:22 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:acc3dc5d26e3 |
|---|---|
| 1 deletionHoptspot1 [A/C][G/T][A/G][A/G]GT | |
| 2 deletionHoptspot1rev TG[A/G][A/G][G/T][A/C] | |
| 3 deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA | |
| 4 deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T] | |
| 5 deletionHoptspot2 [C/T][C/T][C/T]TG | |
| 6 deletionHoptspot2rev GT[C/T][C/T][C/T] | |
| 7 deletionHoptspot2comp [A/G][A/G][A/G]AC | |
| 8 deletionHoptspot2revcomp CA[A/G][A/G][A/G] | |
| 9 deletionHoptspot3 CAG[A/G] | |
| 10 deletionHoptspot3rev [A/G]GAC | |
| 11 deletionHoptspot3comp GTC[C/T] | |
| 12 deletionHoptspot3revcomp [C/T]CTG | |
| 13 dnaPolPauseFrameshift1 GAG | |
| 14 dnaPolPauseFrameshift1comp CTC | |
| 15 dnaPolPauseFrameshift2 ACG | |
| 16 dnaPolPauseFrameshift2rev GCA | |
| 17 dnaPolPauseFrameshift2comp TGC | |
| 18 dnaPolPauseFrameshift2revcomp CGT | |
| 19 dnaPolPauseFrameshift3 GC[G/C] | |
| 20 dnaPolPauseFrameshift3rev [G/C]CG | |
| 21 dnaPolPauseFrameshift3comp CG[G/C] | |
| 22 dnaPolPauseFrameshift3revcomp [G/C]GC | |
| 23 dnaPolPauseFrameshift4 [A/T]GGAG | |
| 24 dnaPolPauseFrameshift4rev GAGG[A/T] | |
| 25 dnaPolPauseFrameshift4comp [A/T]CCTC | |
| 26 dnaPolPauseFrameshift4revcomp CTCC[A/T] | |
| 27 dnaPolPauseFrameshift5 TCCCCC | |
| 28 dnaPolPauseFrameshift5rev CCCCCT | |
| 29 dnaPolPauseFrameshift5comp AGGGGG | |
| 30 dnaPolPauseFrameshift5revcomp GGGGGA | |
| 31 dnaPolPauseFrameshift6 CTGGCG | |
| 32 dnaPolPauseFrameshift6rev GCGGTC | |
| 33 dnaPolPauseFrameshift6comp GACCGC | |
| 34 dnaPolPauseFrameshift6revcomp CGCCAG | |
| 35 dnaPolPauseFrameshift7 ACCC[A/T][A/G] | |
| 36 dnaPolPauseFrameshift7rev [A/G][A/T]CCCA | |
| 37 dnaPolPauseFrameshift7comp TGGG[A/T][T/C] | |
| 38 dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT | |
| 39 dnaPolPauseFrameshift8 TTTT | |
| 40 dnaPolPauseFrameshift8comp AAAA | |
| 41 dnaPolPauseFrameshift9 TGG[A/C/G/T]GT | |
| 42 dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT | |
| 43 dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA | |
| 44 dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA | |
| 45 dnaPolPauseFrameshift10 ACCCCA | |
| 46 dnaPolPauseFrameshift10comp TGGGGT | |
| 47 indelHotspot1 GTAAGT | |
| 48 indelHotspot1rev TGAATG | |
| 49 indelHotspot1comp CATTCA | |
| 50 indelHotspot1revcomp ACTTAC | |
| 51 insertionHotspot1 AT[A/C][A/C]GCC | |
| 52 insertionHotspot1rev CCG[A/C][A/C]TA | |
| 53 insertionHotspot1comp TA[T/G][T/G]CGG | |
| 54 insertionHotspot1revcomp GGC[T/G][T/G]AT | |
| 55 insertionHotspot2 TACC[A/G]C | |
| 56 insertionHotspot2rev C[A/G]CCAT | |
| 57 insertionHotspot2comp ATGG[T/C]G | |
| 58 insertionHotspot2revcomp G[T/C]GGTA | |
| 59 topoisomeraseCleavageSite1 CAT | |
| 60 topoisomeraseCleavageSite1rev TAC | |
| 61 topoisomeraseCleavageSite1comp GTA | |
| 62 topoisomeraseCleavageSite1revcomp ATG | |
| 63 topoisomeraseCleavageSite2 CT[T/C] | |
| 64 topoisomeraseCleavageSite2rev [T/C]TC | |
| 65 topoisomeraseCleavageSite2comp GA[A/G] | |
| 66 topoisomeraseCleavageSite2revcomp [A/G]AG | |
| 67 topoisomeraseCleavageSite3 GT[T/C] | |
| 68 topoisomeraseCleavageSite3rev [T/C]TG | |
| 69 topoisomeraseCleavageSite3comp CA[A/G] | |
| 70 topoisomeraseCleavageSite3revcomp [A/G]AC | |
| 71 topoisomeraseCleavageSite4 [A/G]A[T/G] | |
| 72 topoisomeraseCleavageSite4rev [T/G]A[A/G] | |
| 73 topoisomeraseCleavageSite4comp [T/C]T[A/C] | |
| 74 topoisomeraseCleavageSite4revcomp [A/C]T[T/C] | |
| 75 topoisomeraseCleavageSite5 [T/C]CCTT | |
| 76 topoisomeraseCleavageSite5rev TTCC[T/C] | |
| 77 topoisomeraseCleavageSite5comp [A/G]GGAA | |
| 78 topoisomeraseCleavageSite5revcomp AAGG[A/G] | |
| 79 topoisomeraseCleavageSite6 [T/C]TA | |
| 80 topoisomeraseCleavageSite6rev AT[T/C] | |
| 81 topoisomeraseCleavageSite6comp [A/G]AT | |
| 82 topoisomeraseCleavageSite6revcomp TA[A/G] | |
| 83 translinTarget1 ATGCAG | |
| 84 translinTarget1rev GACGTA | |
| 85 translinTarget1comp TACGTC | |
| 86 translinTarget1revcomp CTGCAT | |
| 87 translinTarget2 GCCC[A/T][G/C][G/C][A/T] | |
| 88 translinTarget2rev [A/T][G/C][G/C][A/T]CCCG | |
| 89 translinTarget2comp CGGG[A/T][G/C][G/C][A/T] | |
| 90 translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC | |
| 91 vDjRecombinationSignal1 CACAGTG | |
| 92 vDjRecombinationSignal1rev GTGACAC | |
| 93 vDjRecombinationSignal1comp GTGTCAC | |
| 94 vDjRecombinationSignal1revcomp CACTGTG | |
| 95 vDjRecombinationSignal2 ACAAAAACC | |
| 96 vDjRecombinationSignal2rev CCAAAAACA | |
| 97 vDjRecombinationSignal2comp TGTTTTTGG | |
| 98 vDjRecombinationSignal2revcomp GGTTTTTGT | |
| 99 x-likeSite1 CCG | |
| 100 x-likeSite1rev GCC | |
| 101 x-likeSite1comp GGC | |
| 102 x-likeSite1revcomp CGG | |
| 103 x-likeSite2 GCTGGTGG | |
| 104 x-likeSite2rev GGTGGTCG | |
| 105 x-likeSite2comp CGACCACC | |
| 106 x-likeSite2revcomp CCACCAGC | |
| 107 x-likeSite3 GGGCAGGA[A/C/G/T]G | |
| 108 x-likeSite3rev G[A/C/G/T]AGGACGGG | |
| 109 x-likeSite3comp CCCGTCCT[A/C/G/T]C | |
| 110 x-likeSite3revcomp C[A/C/G/T]TCCTGCCC | |
| 111 x-likeSite4 GC[A/T]GG[A/T]GG | |
| 112 x-likeSite4rev GG[A/T]GG[A/T]CG | |
| 113 x-likeSite4comp CG[A/T]CC[A/T]CC | |
| 114 x-likeSite4revcomp CC[A/T]CC[A/T]GC | |
| 115 x-likeSite5 GGAGGTGGGCAGGA[A/G]G | |
| 116 x-likeSite5rev G[A/G]AGGACGGGTGGAGG | |
| 117 x-likeSite5comp CCTCCACCCGTCCT[T/C]C | |
| 118 x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC | |
| 119 x-likeSite6 AGAGGTGGGCAGGTGG | |
| 120 x-likeSite6rev GGTGGACGGGTGGAGA | |
| 121 x-likeSite6comp TCTCCACCCGTCCACC | |
| 122 x-likeSite6revcomp CCACCTGCCCACCTCT |