comparison test-data/motifs1.tabular @ 0:46325357b948 draft

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author devteam
date Wed, 25 Sep 2013 10:05:37 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:46325357b948
1 deletionHoptspot1 [A/C][G/T][A/G][A/G]GT
2 deletionHoptspot1rev TG[A/G][A/G][G/T][A/C]
3 deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA
4 deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T]
5 deletionHoptspot2 [C/T][C/T][C/T]TG
6 deletionHoptspot2rev GT[C/T][C/T][C/T]
7 deletionHoptspot2comp [A/G][A/G][A/G]AC
8 deletionHoptspot2revcomp CA[A/G][A/G][A/G]
9 deletionHoptspot3 CAG[A/G]
10 deletionHoptspot3rev [A/G]GAC
11 deletionHoptspot3comp GTC[C/T]
12 deletionHoptspot3revcomp [C/T]CTG
13 dnaPolPauseFrameshift1 GAG
14 dnaPolPauseFrameshift1comp CTC
15 dnaPolPauseFrameshift2 ACG
16 dnaPolPauseFrameshift2rev GCA
17 dnaPolPauseFrameshift2comp TGC
18 dnaPolPauseFrameshift2revcomp CGT
19 dnaPolPauseFrameshift3 GC[G/C]
20 dnaPolPauseFrameshift3rev [G/C]CG
21 dnaPolPauseFrameshift3comp CG[G/C]
22 dnaPolPauseFrameshift3revcomp [G/C]GC
23 dnaPolPauseFrameshift4 [A/T]GGAG
24 dnaPolPauseFrameshift4rev GAGG[A/T]
25 dnaPolPauseFrameshift4comp [A/T]CCTC
26 dnaPolPauseFrameshift4revcomp CTCC[A/T]
27 dnaPolPauseFrameshift5 TCCCCC
28 dnaPolPauseFrameshift5rev CCCCCT
29 dnaPolPauseFrameshift5comp AGGGGG
30 dnaPolPauseFrameshift5revcomp GGGGGA
31 dnaPolPauseFrameshift6 CTGGCG
32 dnaPolPauseFrameshift6rev GCGGTC
33 dnaPolPauseFrameshift6comp GACCGC
34 dnaPolPauseFrameshift6revcomp CGCCAG
35 dnaPolPauseFrameshift7 ACCC[A/T][A/G]
36 dnaPolPauseFrameshift7rev [A/G][A/T]CCCA
37 dnaPolPauseFrameshift7comp TGGG[A/T][T/C]
38 dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT
39 dnaPolPauseFrameshift8 TTTT
40 dnaPolPauseFrameshift8comp AAAA
41 dnaPolPauseFrameshift9 TGG[A/C/G/T]GT
42 dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT
43 dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA
44 dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA
45 dnaPolPauseFrameshift10 ACCCCA
46 dnaPolPauseFrameshift10comp TGGGGT
47 indelHotspot1 GTAAGT
48 indelHotspot1rev TGAATG
49 indelHotspot1comp CATTCA
50 indelHotspot1revcomp ACTTAC
51 insertionHotspot1 AT[A/C][A/C]GCC
52 insertionHotspot1rev CCG[A/C][A/C]TA
53 insertionHotspot1comp TA[T/G][T/G]CGG
54 insertionHotspot1revcomp GGC[T/G][T/G]AT
55 insertionHotspot2 TACC[A/G]C
56 insertionHotspot2rev C[A/G]CCAT
57 insertionHotspot2comp ATGG[T/C]G
58 insertionHotspot2revcomp G[T/C]GGTA
59 topoisomeraseCleavageSite1 CAT
60 topoisomeraseCleavageSite1rev TAC
61 topoisomeraseCleavageSite1comp GTA
62 topoisomeraseCleavageSite1revcomp ATG
63 topoisomeraseCleavageSite2 CT[T/C]
64 topoisomeraseCleavageSite2rev [T/C]TC
65 topoisomeraseCleavageSite2comp GA[A/G]
66 topoisomeraseCleavageSite2revcomp [A/G]AG
67 topoisomeraseCleavageSite3 GT[T/C]
68 topoisomeraseCleavageSite3rev [T/C]TG
69 topoisomeraseCleavageSite3comp CA[A/G]
70 topoisomeraseCleavageSite3revcomp [A/G]AC
71 topoisomeraseCleavageSite4 [A/G]A[T/G]
72 topoisomeraseCleavageSite4rev [T/G]A[A/G]
73 topoisomeraseCleavageSite4comp [T/C]T[A/C]
74 topoisomeraseCleavageSite4revcomp [A/C]T[T/C]
75 topoisomeraseCleavageSite5 [T/C]CCTT
76 topoisomeraseCleavageSite5rev TTCC[T/C]
77 topoisomeraseCleavageSite5comp [A/G]GGAA
78 topoisomeraseCleavageSite5revcomp AAGG[A/G]
79 topoisomeraseCleavageSite6 [T/C]TA
80 topoisomeraseCleavageSite6rev AT[T/C]
81 topoisomeraseCleavageSite6comp [A/G]AT
82 topoisomeraseCleavageSite6revcomp TA[A/G]
83 translinTarget1 ATGCAG
84 translinTarget1rev GACGTA
85 translinTarget1comp TACGTC
86 translinTarget1revcomp CTGCAT
87 translinTarget2 GCCC[A/T][G/C][G/C][A/T]
88 translinTarget2rev [A/T][G/C][G/C][A/T]CCCG
89 translinTarget2comp CGGG[A/T][G/C][G/C][A/T]
90 translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC
91 vDjRecombinationSignal1 CACAGTG
92 vDjRecombinationSignal1rev GTGACAC
93 vDjRecombinationSignal1comp GTGTCAC
94 vDjRecombinationSignal1revcomp CACTGTG
95 vDjRecombinationSignal2 ACAAAAACC
96 vDjRecombinationSignal2rev CCAAAAACA
97 vDjRecombinationSignal2comp TGTTTTTGG
98 vDjRecombinationSignal2revcomp GGTTTTTGT
99 x-likeSite1 CCG
100 x-likeSite1rev GCC
101 x-likeSite1comp GGC
102 x-likeSite1revcomp CGG
103 x-likeSite2 GCTGGTGG
104 x-likeSite2rev GGTGGTCG
105 x-likeSite2comp CGACCACC
106 x-likeSite2revcomp CCACCAGC
107 x-likeSite3 GGGCAGGA[A/C/G/T]G
108 x-likeSite3rev G[A/C/G/T]AGGACGGG
109 x-likeSite3comp CCCGTCCT[A/C/G/T]C
110 x-likeSite3revcomp C[A/C/G/T]TCCTGCCC
111 x-likeSite4 GC[A/T]GG[A/T]GG
112 x-likeSite4rev GG[A/T]GG[A/T]CG
113 x-likeSite4comp CG[A/T]CC[A/T]CC
114 x-likeSite4revcomp CC[A/T]CC[A/T]GC
115 x-likeSite5 GGAGGTGGGCAGGA[A/G]G
116 x-likeSite5rev G[A/G]AGGACGGGTGGAGG
117 x-likeSite5comp CCTCCACCCGTCCT[T/C]C
118 x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC
119 x-likeSite6 AGAGGTGGGCAGGTGG
120 x-likeSite6rev GGTGGACGGGTGGAGA
121 x-likeSite6comp TCTCCACCCGTCCACC
122 x-likeSite6revcomp CCACCTGCCCACCTCT