Mercurial > repos > devteam > condense_characters

comparison condense_characters.xml @ 0:2c08781560de draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded condense_characters tarball.
author devteam
date Tue, 04 Dec 2012 10:53:39 -0500
parents
children af7fe71973ac
comparison
equal deleted inserted replaced
-1:000000000000 0:2c08781560de
1 <tool id="Condense characters1" name="Condense">
2 <description>consecutive characters</description>
3 <command interpreter="perl">condense_characters.pl $input $character $out_file1</command>
4 <inputs>
5 <!-- <display>condense all consecutive $character from $input</display> -->
6 <param name="character" type="select" label="Condense all consecutive">
7 <option value="T">Tabs</option>
8 <option value="Sp">Spaces</option>
9 <option value="Dt">Dots</option>
10 <option value="C">Commas</option>
11 <option value="D">Dashes</option>
12 <option value="U">Underscores</option>
13 <option value="P">Pipes</option>
14 </param>
15 <param format="txt" name="input" type="data" label="in this Query"/>
16 </inputs>
17 <outputs>
18 <data format="input" name="out_file1" metadata_source="input" />
19 </outputs>
20 <tests>
21 <test>
22 <param name="character" value="T"/>
23 <param name="input" value="1.bed"/>
24 <output name="out_file1" file="eq-condense.dat"/>
25 </test>
26 </tests>
27 <help>
28
29 **What it does**
30
31 This tool condenses all consecutive characters of a specified type.
32
33 -----
34
35 **Example**
36
37 - Input file::
38
39 geneX,,,10,,,,,20
40 geneY,,5,,,,,12,15,9,
41
42 - Condense all consecutive commas. The above file will be converted into::
43
44 geneX,10,20
45 geneY,5,12,15,9
46
47 </help>
48 </tool>