Mercurial > repos > devteam > count_gff_features

diff count_gff_features.py @ 1:188392a0d0a8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
author devteam
date Tue, 06 Jun 2017 18:37:53 -0400
parents fabda887a71f
children
line wrap: on
line diff
--- a/count_gff_features.py	Mon Jul 28 11:56:10 2014 -0400
+++ b/count_gff_features.py	Tue Jun 06 18:37:53 2017 -0400
@@ -1,10 +1,13 @@
 #!/usr/bin/env python
 # This tool takes a gff file as input and counts the number of features in it.
 
-import sys, fileinput
-from galaxy import eggs
+from __future__ import print_function
+
+import fileinput
+import sys
+
+from bx.intervals.io import GenomicInterval
 from galaxy.datatypes.util.gff_util import GFFReaderWrapper
-from bx.intervals.io import GenomicInterval
 
 # Get args.
 input_file = sys.argv[1:]
@@ -15,4 +18,4 @@
     if isinstance( feature, GenomicInterval ):
         count += 1
 
-print count
\ No newline at end of file
+print(count)