Mercurial > repos > devteam > cuffcompare

comparison test-data/cuffcompare_out7.txt @ 6:8e534225baa9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Fri, 19 Dec 2014 11:55:55 -0500
parents 9d35cf35634e
children f648e5180e40
comparison
equal deleted inserted replaced
5:67695d7ff787 6:8e534225baa9
1 # Cuffcompare v2.0.2 | Command line was: 1 # Cuffcompare v2.2.1 | Command line was:
2 #cuffcompare -o cc_output -r /Users/jeremy/projects/galaxy-central/database/files/002/dataset_2770.dat -R ./input1 ./input2 2 #cuffcompare -o cc_output -r /tmp/tmpZ9KXPVfiles/000/dataset_3.dat -R -e 100 -d 100 ./input1 ./input2
3 # 3 #
4 4
5 #= Summary for dataset: ./input1 : 5 #= Summary for dataset: ./input1 :
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus) 7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon) 8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Corresponding super-loci: 1 9 # Super-loci w/ reference transcripts: 1
10 #--------------------| Sn | Sp | fSn | fSp 10 #--------------------| Sn | Sp | fSn | fSp
11 Base level: 2.2 2.3 - - 11 Base level: 2.2 2.3 - -
12 Exon level: 0.0 0.0 0.0 0.0 12 Exon level: 0.0 0.0 0.0 0.0
13 Intron level: 0.0 nan 0.0 nan 13 Intron level: 0.0 -nan 0.0 -nan
14 Intron chain level: 0.0 nan 0.0 nan 14 Intron chain level: 0.0 -nan 0.0 -nan
15 Transcript level: 0.0 0.0 0.0 0.0 15 Transcript level: 0.0 0.0 0.0 0.0
16 Locus level: 0.0 0.0 0.0 0.0 16 Locus level: 0.0 0.0 0.0 0.0
17 17
18 Matching intron chains: 0 18 Matching intron chains: 0
19 Matching loci: 0 19 Matching loci: 0
20 20
21 Missed exons: 2/3 ( 66.7%) 21 Missed exons: 2/3 ( 66.7%)
22 Novel exons: 49/50 ( 98.0%) 22 Novel exons: 49/50 ( 98.0%)
23 Missed introns: 2/2 (100.0%) 23 Missed introns: 2/2 (100.0%)
24 Missed loci: 0/1 ( 0.0%) 24 Missed loci: 0/1 ( 0.0%)