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comparison cuffdiff_wrapper.xml @ 12:0f32ad418df8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffdiff commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:34:34 -0500
parents 5ce5197de50c
children f1b92120dfaa
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11:5ce5197de50c 12:0f32ad418df8
11 </macros> 11 </macros>
12 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command> 12 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command>
13 <command><![CDATA[ 13 <command><![CDATA[
14 cuffdiff 14 cuffdiff
15 --no-update-check 15 --no-update-check
16 --quiet
16 --FDR=$fdr 17 --FDR=$fdr
17 --num-threads="\${GALAXY_SLOTS:-4}" 18 --num-threads="\${GALAXY_SLOTS:-4}"
18 --min-alignment-count=$min_alignment_count 19 --min-alignment-count=$min_alignment_count
19 --library-norm-method=$library_norm_method 20 --library-norm-method=$library_norm_method
20 --dispersion-method=$dispersion_method 21 --dispersion-method=$dispersion_method