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comparison cufflinks_wrapper.xml @ 11:e04dbae2abe0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cufflinks commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
author devteam
date Sun, 19 Feb 2017 12:12:28 -0500
parents 83bec71c5c9f
children d080005cffe1
comparison
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10:83bec71c5c9f 11:e04dbae2abe0
1 <tool id="cufflinks" name="Cufflinks" version="@VERSION@.1"> 1 <tool id="cufflinks" name="Cufflinks" version="@VERSION@.2">
2 <description>transcript assembly and FPKM (RPKM) estimates for RNA-Seq data</description> 2 <description>transcript assembly and FPKM (RPKM) estimates for RNA-Seq data</description>
3 <macros> 3 <macros>
4 <import>cuff_macros.xml</import> 4 <import>cuff_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <expand macro="requirements" />
7 <requirement type="package" version="0.7.3">bx-python</requirement>
8 <requirement type="package" version="1.9.0">six</requirement>
9 <requirement type="package" version="2.2.1">cufflinks</requirement>
10 </requirements>
11 <expand macro="stdio" />
12 <version_command>cufflinks 2>&amp;1 | head -n 1</version_command> 7 <version_command>cufflinks 2>&amp;1 | head -n 1</version_command>
13 <command> 8 <command detect_errors="aggressive">
14 python '$__tool_directory__/cufflinks_wrapper.py' 9 python '$__tool_directory__/cufflinks_wrapper.py'
15 --input '$input' 10 --input '$input'
16 --assembled-isoforms-output '$assembled_isoforms' 11 --assembled-isoforms-output '$assembled_isoforms'
17 --num-threads "\${GALAXY_SLOTS:-4}" 12 --num-threads "\${GALAXY_SLOTS:-4}"
18 -I $max_intron_len 13 -I $max_intron_len