# HG changeset patch
# User Nate Coraor <nate@bx.psu.edu>
# Date 1389896045 18000
# Node ID 9aab29e159a782318dbca1f66ccf96d926c88ca9
# Parent  fe6f99e3d7f463b74951d6991bb658f63748e475
Convert tool to use $GALAXY_SLOTS if available.

diff -r fe6f99e3d7f4 -r 9aab29e159a7 cufflinks_wrapper.xml
--- a/cufflinks_wrapper.xml	Thu Jan 09 14:28:13 2014 -0500
+++ b/cufflinks_wrapper.xml	Thu Jan 16 13:14:05 2014 -0500
@@ -9,7 +9,7 @@
         cufflinks_wrapper.py 
             --input=$input
             --assembled-isoforms-output=$assembled_isoforms
-            --num-threads="4"
+            --num-threads="\${GALAXY_SLOTS:-4}"
             -I $max_intron_len
             -F $min_isoform_fraction
             -j $pre_mrna_fraction