Mercurial > repos > devteam > cuffmerge

annotate test-data/cuffcompare_in3.gtf @ 8:5543c3d33e26

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Convert tool to use $GALAXY_SLOTS if available.
author Nate Coraor <nate@bx.psu.edu>
date Thu, 16 Jan 2014 13:14:19 -0500
parents dbbd37e013aa
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
1 chr1 mm9_refFlat stop_codon 3206103 3206105 0.000000 - . gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
2 chr1 mm9_refFlat CDS 3206106 3207049 0.000000 - 2 gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
3 chr1 mm9_refFlat exon 3204563 3207049 0.000000 - . gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
4 chr1 mm9_refFlat CDS 3411783 3411982 0.000000 - 1 gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
5 chr1 mm9_refFlat exon 3411783 3411982 0.000000 - . gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
6 chr1 mm9_refFlat CDS 3660633 3661429 0.000000 - 0 gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
7 chr1 mm9_refFlat start_codon 3661427 3661429 0.000000 - . gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
8 chr1 mm9_refFlat exon 3660633 3661579 0.000000 - . gene_id "Xkr4"; transcript_id "Xkr4";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
9 chr1 mm9_refFlat stop_codon 4334681 4334683 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
10 chr1 mm9_refFlat CDS 4334684 4340172 0.000000 - 2 gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
11 chr1 mm9_refFlat exon 4334224 4340172 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
12 chr1 mm9_refFlat CDS 4341991 4342162 0.000000 - 0 gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
13 chr1 mm9_refFlat exon 4341991 4342162 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
14 chr1 mm9_refFlat CDS 4342283 4342906 0.000000 - 0 gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
15 chr1 mm9_refFlat start_codon 4342904 4342906 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
16 chr1 mm9_refFlat exon 4342283 4342918 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
17 chr1 mm9_refFlat exon 4350281 4350473 0.000000 - . gene_id "Rp1"; transcript_id "Rp1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
18 chr1 mm9_refFlat stop_codon 4481797 4481799 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
19 chr1 mm9_refFlat CDS 4481800 4482749 0.000000 - 2 gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
20 chr1 mm9_refFlat exon 4481009 4482749 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
21 chr1 mm9_refFlat CDS 4483181 4483487 0.000000 - 0 gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
22 chr1 mm9_refFlat start_codon 4483485 4483487 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
23 chr1 mm9_refFlat exon 4483181 4483547 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
24 chr1 mm9_refFlat exon 4483853 4483944 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
25 chr1 mm9_refFlat exon 4485217 4486023 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
26 chr1 mm9_refFlat exon 4486372 4486494 0.000000 - . gene_id "Sox17"; transcript_id "Sox17";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
27 chr1 mm9_refFlat stop_codon 4766545 4766547 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
28 chr1 mm9_refFlat CDS 4766548 4766882 0.000000 - 2 gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
29 chr1 mm9_refFlat exon 4763279 4766882 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
30 chr1 mm9_refFlat CDS 4767606 4767729 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
31 chr1 mm9_refFlat exon 4767606 4767729 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
32 chr1 mm9_refFlat CDS 4772649 4772814 0.000000 - 1 gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
33 chr1 mm9_refFlat exon 4772649 4772814 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
34 chr1 mm9_refFlat CDS 4774032 4774186 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
35 chr1 mm9_refFlat exon 4774032 4774186 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
36 chr1 mm9_refFlat CDS 4775654 4775758 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
37 chr1 mm9_refFlat start_codon 4775756 4775758 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
38 chr1 mm9_refFlat exon 4775654 4775807 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
39 chr1 mm9_refFlat stop_codon 4764533 4764535 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
40 chr1 mm9_refFlat CDS 4764536 4764597 0.000000 - 2 gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
41 chr1 mm9_refFlat exon 4763279 4764597 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
42 chr1 mm9_refFlat CDS 4767606 4767729 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
43 chr1 mm9_refFlat exon 4767606 4767729 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
44 chr1 mm9_refFlat CDS 4772649 4772814 0.000000 - 1 gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
45 chr1 mm9_refFlat exon 4772649 4772814 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
46 chr1 mm9_refFlat CDS 4774032 4774186 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
47 chr1 mm9_refFlat exon 4774032 4774186 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
48 chr1 mm9_refFlat CDS 4775654 4775758 0.000000 - 0 gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
49 chr1 mm9_refFlat start_codon 4775756 4775758 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
50 chr1 mm9_refFlat exon 4775654 4775807 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
51 chr1 mm9_refFlat exon 4763279 4764597 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
52 chr1 mm9_refFlat exon 4767606 4767729 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
53 chr1 mm9_refFlat exon 4772649 4772814 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
54 chr1 mm9_refFlat exon 4775654 4775807 0.000000 - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
55 chr1 mm9_refFlat start_codon 4797995 4797997 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
56 chr1 mm9_refFlat CDS 4797995 4798063 0.000000 + 0 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
57 chr1 mm9_refFlat exon 4797974 4798063 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
58 chr1 mm9_refFlat CDS 4798536 4798567 0.000000 + 0 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
59 chr1 mm9_refFlat exon 4798536 4798567 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
60 chr1 mm9_refFlat CDS 4818665 4818730 0.000000 + 1 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
61 chr1 mm9_refFlat exon 4818665 4818730 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
62 chr1 mm9_refFlat CDS 4820349 4820396 0.000000 + 1 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
63 chr1 mm9_refFlat exon 4820349 4820396 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
64 chr1 mm9_refFlat CDS 4822392 4822462 0.000000 + 1 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
65 chr1 mm9_refFlat exon 4822392 4822462 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
66 chr1 mm9_refFlat CDS 4827082 4827155 0.000000 + 2 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
67 chr1 mm9_refFlat exon 4827082 4827155 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
68 chr1 mm9_refFlat CDS 4829468 4829569 0.000000 + 0 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
69 chr1 mm9_refFlat exon 4829468 4829569 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
70 chr1 mm9_refFlat CDS 4831037 4831213 0.000000 + 0 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
71 chr1 mm9_refFlat exon 4831037 4831213 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
72 chr1 mm9_refFlat CDS 4835044 4835094 0.000000 + 0 gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
73 chr1 mm9_refFlat stop_codon 4835095 4835097 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
74 chr1 mm9_refFlat exon 4835044 4836816 0.000000 + . gene_id "Lypla1"; transcript_id "Lypla1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
75 chr1 mm9_refFlat start_codon 4847995 4847997 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
76 chr1 mm9_refFlat CDS 4847995 4848057 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
77 chr1 mm9_refFlat exon 4847775 4848057 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
78 chr1 mm9_refFlat CDS 4857551 4857613 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
79 chr1 mm9_refFlat exon 4857551 4857613 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
80 chr1 mm9_refFlat CDS 4868108 4868213 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
81 chr1 mm9_refFlat exon 4868108 4868213 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
82 chr1 mm9_refFlat CDS 4876825 4876912 0.000000 + 2 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
83 chr1 mm9_refFlat exon 4876825 4876912 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
84 chr1 mm9_refFlat CDS 4879538 4879683 0.000000 + 1 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
85 chr1 mm9_refFlat exon 4879538 4879683 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
86 chr1 mm9_refFlat CDS 4880821 4880877 0.000000 + 2 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
87 chr1 mm9_refFlat exon 4880821 4880877 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
88 chr1 mm9_refFlat CDS 4881996 4882150 0.000000 + 2 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
89 chr1 mm9_refFlat exon 4881996 4882150 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
90 chr1 mm9_refFlat CDS 4883498 4883644 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
91 chr1 mm9_refFlat exon 4883498 4883644 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
92 chr1 mm9_refFlat CDS 4885015 4885086 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
93 chr1 mm9_refFlat exon 4885015 4885086 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
94 chr1 mm9_refFlat CDS 4886437 4886442 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
95 chr1 mm9_refFlat stop_codon 4886443 4886445 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
96 chr1 mm9_refFlat exon 4886437 4887987 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
97 chr1 mm9_refFlat start_codon 4847995 4847997 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
98 chr1 mm9_refFlat CDS 4847995 4848057 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
99 chr1 mm9_refFlat exon 4847775 4848057 0.000000 + . gene_id "Tcea1"; transcript_id "Tcea1_dup1";
dbbd37e013aa Uploaded tool tarball.
devteam
parents:
diff changeset
100 chr1 mm9_refFlat CDS 4857551 4857613 0.000000 + 0 gene_id "Tcea1"; transcript_id "Tcea1_dup1";