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comparison cuffmerge_wrapper.xml @ 15:86285ddd4512 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge commit 92be38a0f40ef6d6ccb55999f3eb8bf960e376c8"
author iuc
date Fri, 20 Aug 2021 16:40:22 +0000
parents 6a6717a5f421
children 22cf48ad7b16
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14:6a6717a5f421 15:86285ddd4512
1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.2"> 1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.3">
2 <description>merge together several Cufflinks assemblies</description> 2 <description>merge together several Cufflinks assemblies</description>
3 <macros> 3 <macros>
4 <import>cuff_macros.xml</import> 4 <import>cuff_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
18 18
19 ## Use sequence data? 19 ## Use sequence data?
20 #if $seq_data.use_seq_data == "Yes": 20 #if $seq_data.use_seq_data == "Yes":
21 -s 21 -s
22 #if $seq_data.seq_source.index_source == "history": 22 #if $seq_data.seq_source.index_source == "history":
23 --ref_file '${seq_data.seq_source.ref_file}' 23 '${seq_data.seq_source.ref_file}'
24 #else: 24 #else:
25 --index '${seq_data.seq_source.index.fields.path}' 25 '${seq_data.seq_source.index.fields.path}'
26 #end if 26 #end if
27 #end if 27 #end if
28 28
29 --min-isoform-fraction="${min_isoform_fraction}" 29 --min-isoform-fraction="${min_isoform_fraction}"
30 assembly_GTF_list.txt 30 assembly_GTF_list.txt