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comparison cuffnorm_wrapper.xml @ 1:7d4c2097aac5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffnorm commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:35:18 -0500
parents a26af05ac218
children f8fdf50e0b3b
comparison
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0:a26af05ac218 1:7d4c2097aac5
1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.0"> 1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.1">
2 <description>Create normalized expression levels</description> 2 <description>Create normalized expression levels</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <expand macro="stdio" /> 4 <expand macro="stdio" />
5 <macros> 5 <macros>
6 <import>cuff_macros.xml</import> 6 <import>cuff_macros.xml</import>
90 </data> 90 </data>
91 <data format="tabular" name="tss_groups_read_group" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.read_group_tracking" > 91 <data format="tabular" name="tss_groups_read_group" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.read_group_tracking" >
92 <filter>(include_read_group_files == 'Yes')</filter> 92 <filter>(include_read_group_files == 'Yes')</filter>
93 <filter>(output_format == 'cuffdiff')</filter> 93 <filter>(output_format == 'cuffdiff')</filter>
94 </data> 94 </data>
95 <data format="text" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" > 95 <data format="txt" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" >
96 <filter>(include_read_group_files == 'Yes')</filter> 96 <filter>(include_read_group_files == 'Yes')</filter>
97 <filter>(output_format == 'cuffdiff')</filter> 97 <filter>(output_format == 'cuffdiff')</filter>
98 </data> 98 </data>
99 <!-- simple-table format--> 99 <!-- simple-table format-->
100 <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" > 100 <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" >