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changeset 6:28b94cfbfdb9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffnorm commit 80b06e80066b32ad53ed418628992f056444256f
author iuc
date Sat, 05 Oct 2024 11:16:24 +0000
parents 9a854107dbb2
children
files cuff_macros.xml cuffnorm_wrapper.xml
diffstat 2 files changed, 8 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/cuff_macros.xml	Fri Jul 03 11:44:40 2020 -0400
+++ b/cuff_macros.xml	Sat Oct 05 11:16:24 2024 +0000
@@ -1,9 +1,10 @@
 <macros>
-    <token name="@VERSION@">2.2.1</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
+    <token name="@PROFILE@">23.1</token>
 
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.1">cufflinks</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">cufflinks</requirement>
             <yield />
         </requirements>
     </xml>
--- a/cuffnorm_wrapper.xml	Fri Jul 03 11:44:40 2020 -0400
+++ b/cuffnorm_wrapper.xml	Sat Oct 05 11:16:24 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.3">
+<tool id="cuffnorm" name="Cuffnorm" version="@TOOL_VERSION@.4" profile="@PROFILE@">
     <description>Create normalized expression levels</description>
     <macros>
       <import>cuff_macros.xml</import>
@@ -96,19 +96,19 @@
             <filter>(output_format == 'cuffdiff')</filter>
         </data>
         <!-- simple-table format-->
-         <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" >
+        <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" >
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'simple-table')</filter>
         </data>
-        <data format="tabular" name="genes_read_group" label="${tool.name} on ${on_string}: genes read group tracking" from_work_dir="genes.attr_table" >
+        <data format="tabular" name="genes_attr" label="${tool.name} on ${on_string}: genes read group tracking" from_work_dir="genes.attr_table" >
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'simple-table')</filter>
         </data>
-        <data format="tabular" name="cds_read_group" label="${tool.name} on ${on_string}: CDs read group tracking" from_work_dir="cds.attr_table" >
+        <data format="tabular" name="cds_attr" label="${tool.name} on ${on_string}: CDs read group tracking" from_work_dir="cds.attr_table" >
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'simple-table')</filter>
         </data>
-        <data format="tabular" name="tss_groups_read_group" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.attr_table" >
+        <data format="tabular" name="tss_attr" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.attr_table" >
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'simple-table')</filter>
         </data>