Mercurial > repos > devteam > cuffnorm
changeset 1:7d4c2097aac5 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffnorm commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:35:18 -0500 |
| parents | a26af05ac218 |
| children | f8fdf50e0b3b |
| files | cuff_macros.xml cuffnorm_wrapper.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/cuff_macros.xml Fri Dec 19 12:00:45 2014 -0500 +++ b/cuff_macros.xml Wed Nov 11 12:35:18 2015 -0500 @@ -10,8 +10,8 @@ <stdio> <exit_code range="1:" /> <exit_code range=":-1" /> - <regex match="Error:" /> - <regex match="Exception:" /> + <regex match="Error" /> + <regex match="Exception" /> </stdio> </xml> <xml name="condition_inputs"> @@ -88,4 +88,4 @@ #end for </token> <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token> -</macros> \ No newline at end of file +</macros>
--- a/cuffnorm_wrapper.xml Fri Dec 19 12:00:45 2014 -0500 +++ b/cuffnorm_wrapper.xml Wed Nov 11 12:35:18 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.0"> +<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.1"> <description>Create normalized expression levels</description> <expand macro="requirements" /> <expand macro="stdio" /> @@ -92,7 +92,7 @@ <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'cuffdiff')</filter> </data> - <data format="text" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" > + <data format="txt" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" > <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'cuffdiff')</filter> </data>