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comparison cuff_macros.xml @ 4:679d93c99757 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffquant commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
author iuc
date Tue, 16 Jun 2020 13:01:50 -0400
parents 6dc45faebc1d
children 93148c05136f
comparison
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3:6dc45faebc1d 4:679d93c99757
64 #end if 64 #end if
65 --labels $labels 65 --labels $labels
66 </token> 66 </token>
67 <xml name="cufflinks_gtf_inputs"> 67 <xml name="cufflinks_gtf_inputs">
68 <param format="gtf" name="inputs" type="data" label="GTF file(s) produced by Cufflinks" help="" multiple="true" /> 68 <param format="gtf" name="inputs" type="data" label="GTF file(s) produced by Cufflinks" help="" multiple="true" />
69 <repeat name="additional_inputs" title="Additional GTF Inputs (Lists)">
70 <param format="gtf" name="additional_inputs" type="data_collection" label="GTF file(s) produced by Cufflinks" help="" />
71 </repeat>
72 </xml> 69 </xml>
70 <token name="@CUFFLINKS_LINK_GTF_INPUTS@"><![CDATA[
71 ## Inputs.
72 #for $i, $input_file in enumerate($inputs):
73 ln -s '${input_file}' input_$i &&
74 #end for
75 ]]></token>
73 <token name="@CUFFLINKS_GTF_INPUTS@"> 76 <token name="@CUFFLINKS_GTF_INPUTS@">
74 ## Inputs. 77 ## Inputs.
75 #for $input_file in $inputs: 78 #for $i, $input_file in enumerate($inputs):
76 '${input_file}' 79 'input_$i'
77 #end for
78 #for $additional_input in $additional_inputs:
79 #for $input_file in $additional_input.additional_inputs:
80 '${input_file}'
81 #end for
82 #end for 80 #end for
83 </token> 81 </token>
84 <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token> 82 <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token>
83
84 <xml name="citations">
85 <citations>
86 <citation type="doi">10.1038/nbt.1621</citation>
87 <yield/>
88 </citations>
89 </xml>
90
85 </macros> 91 </macros>