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annotate cummeRbund_options.py @ 2:ac2ebc60ef5d draft

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Uploaded corrected dynamic options
author devteam
date Mon, 16 Mar 2015 15:43:02 -0400
parents f3012521ea79
children c3b54a4b7741
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ac2ebc60ef5d Uploaded corrected dynamic options
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1 import sqlite3
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587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
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587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
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3 def get_genes( database_path ):
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ac2ebc60ef5d Uploaded corrected dynamic options
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4 conn = sqlite3.connect( database_path )
ac2ebc60ef5d Uploaded corrected dynamic options
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5 gene_ids = conn.execute( 'SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name' )
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587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
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6 return [ ( gene_id[ 0 ], gene_id[ 1 ], False ) for gene_id in gene_ids ]
587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
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587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
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parents:
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8 def get_samples( database_path ):
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ac2ebc60ef5d Uploaded corrected dynamic options
devteam
parents: 1
diff changeset
9 conn = sqlite3.connect( database_path )
ac2ebc60ef5d Uploaded corrected dynamic options
devteam
parents: 1
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10 samples = conn.execute( 'SELECT sample_name FROM samples ORDER BY sample_name' )
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587c425b4e76 Initial commit with version 1.0.0 of the cummeRbund wrapper.
devteam
parents:
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11 return [ ( sample[ 0 ], sample[ 0 ], False ) for sample in samples ]