Mercurial > repos > devteam > cummerbund

diff cummeRbund_options.py @ 6:c3b54a4b7741 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author devteam
date Mon, 06 Jul 2020 20:25:47 -0400
parents ac2ebc60ef5d
children
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--- a/cummeRbund_options.py	Thu Feb 23 20:24:03 2017 -0500
+++ b/cummeRbund_options.py	Mon Jul 06 20:25:47 2020 -0400
@@ -1,11 +1,13 @@
 import sqlite3
 
-def get_genes( database_path ):
-    conn = sqlite3.connect( database_path )
-    gene_ids = conn.execute( 'SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name' )
-    return [ ( gene_id[ 0 ], gene_id[ 1 ], False ) for gene_id in gene_ids ]
+
+def get_genes(database_path):
+    conn = sqlite3.connect(database_path)
+    gene_ids = conn.execute('SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name')
+    return [(gene_id[0], gene_id[1], False) for gene_id in gene_ids]
 
-def get_samples( database_path ):
-    conn = sqlite3.connect( database_path )
-    samples = conn.execute( 'SELECT sample_name FROM samples ORDER BY sample_name' )
-    return [ ( sample[ 0 ], sample[ 0 ], False ) for sample in samples ]
+
+def get_samples(database_path):
+    conn = sqlite3.connect(database_path)
+    samples = conn.execute('SELECT sample_name FROM samples ORDER BY sample_name')
+    return [(sample[0], sample[0], False) for sample in samples]