Mercurial > repos > devteam > cummerbund
view cummeRbund_options.py @ 6:c3b54a4b7741 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author | devteam |
---|---|
date | Mon, 06 Jul 2020 20:25:47 -0400 |
parents | ac2ebc60ef5d |
children |
line wrap: on
line source
import sqlite3 def get_genes(database_path): conn = sqlite3.connect(database_path) gene_ids = conn.execute('SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name') return [(gene_id[0], gene_id[1], False) for gene_id in gene_ids] def get_samples(database_path): conn = sqlite3.connect(database_path) samples = conn.execute('SELECT sample_name FROM samples ORDER BY sample_name') return [(sample[0], sample[0], False) for sample in samples]