Mercurial > repos > devteam > data_manager_bowtie2_index_builder

comparison data_manager_conf.xml @ 12:6754002631cd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit e5971e34b23280f7c3d6291a03325b6dd47e3fdd
author iuc
date Sat, 16 Aug 2025 14:35:19 +0000
parents 39865c64a4e1
children
comparison
equal deleted inserted replaced
11:39865c64a4e1 12:6754002631cd
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bowtie_index/v2/${value}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bowtie_index/v2/${value}</target>
13 </move> 13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${path}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${value}</value_translation>
15 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
16 </column> 16 </column>
17 </output> 17 </output>
18 </data_table> 18 </data_table>
19 19
22 <column name="value" /> 22 <column name="value" />
23 <column name="dbkey" /> 23 <column name="dbkey" />
24 <column name="name" /> 24 <column name="name" />
25 <column name="path" output_ref="out_file" > 25 <column name="path" output_ref="out_file" >
26 <!-- no move, always happens as part of bowtie2 and uses that path --> 26 <!-- no move, always happens as part of bowtie2 and uses that path -->
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${path}</value_translation> 27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${value}</value_translation>
28 <value_translation type="function">abspath</value_translation> 28 <value_translation type="function">abspath</value_translation>
29 </column> 29 </column>
30 </output> 30 </output>
31 </data_table> 31 </data_table>
32 </data_manager> 32 </data_manager>