Mercurial > repos > devteam > data_manager_bowtie2_index_builder

comparison data_manager_conf.xml @ 1:9bf4eb559ed5 draft

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planemo upload commit 4381f4022eca6f3c58ae1d01096795cd28c15062
author devteam
date Mon, 10 Aug 2015 16:44:10 -0400
parents 9458af1ab90b
children e87aeff2cf88
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0:9458af1ab90b 1:9bf4eb559ed5
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 3
4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.1"> 4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2">
5 <data_table name="bowtie2_indexes"> 5 <data_table name="bowtie2_indexes">
6 <output> 6 <output>
7 <column name="value" /> 7 <column name="value" />
8 <column name="dbkey" /> 8 <column name="dbkey" />
9 <column name="name" /> 9 <column name="name" />
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation> 16 <value_translation type="function">abspath</value_translation>
17 </column> 17 </column>
18 </output> 18 </output>
19 </data_table> 19 </data_table>
20
21 <data_table name="tophat2_indexes">
22 <output>
23 <column name="value" />
24 <column name="dbkey" />
25 <column name="name" />
26 <column name="path" output_ref="out_file" >
27 <!-- no move, always happens as part of bowtie2 and uses that path -->
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
20 </data_manager> 33 </data_manager>
21 34
22 </data_managers> 35 </data_managers>