Mercurial > repos > devteam > data_manager_bowtie2_index_builder

changeset 2:e87aeff2cf88 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_bowtie2_index_builder commit c54b039220cc3d1767a424b6ae76852d40e67437
author devteam
date Mon, 16 Nov 2015 15:20:08 -0500
parents 9bf4eb559ed5
children 83da94c0e4a6
files data_manager/bowtie2_index_builder.xml data_manager_conf.xml tool_dependencies.xml
diffstat 3 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bowtie2_index_builder.xml	Mon Aug 10 16:44:10 2015 -0400
+++ b/data_manager/bowtie2_index_builder.xml	Mon Nov 16 15:20:08 2015 -0500
@@ -1,7 +1,7 @@
-<tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="0.0.2">
+<tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="2.2.6">
     <description>builder</description>
     <requirements>
-        <requirement type="package" version="2.2.4">bowtie2</requirement>
+        <requirement type="package" version="2.2.6">bowtie2</requirement>
     </requirements>
     <command interpreter="python">bowtie2_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie2_indexes" ${tophat2}</command>
     <stdio>
--- a/data_manager_conf.xml	Mon Aug 10 16:44:10 2015 -0400
+++ b/data_manager_conf.xml	Mon Nov 16 15:20:08 2015 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers>
 
-    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2">
+    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="2.2.6">
         <data_table name="bowtie2_indexes">
             <output>
                 <column name="value" />
--- a/tool_dependencies.xml	Mon Aug 10 16:44:10 2015 -0400
+++ b/tool_dependencies.xml	Mon Nov 16 15:20:08 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="bowtie2" version="2.2.4">
-      <repository changeset_revision="172979b6bf77" name="package_bowtie_2_2_4" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <package name="bowtie2" version="2.2.6">
+      <repository changeset_revision="6d6cca69a34a" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>