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planemo upload commit 2b9ef766ea9ee24964464363a9d41faeefa3d360-dirty
author devteam
date Wed, 26 Aug 2015 11:50:48 -0400
parents 367878cb3698
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0:367878cb3698 1:cc5ae94acf01
2 <description>builder</description> 2 <description>builder</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.9">bwa</requirement> 4 <requirement type="package" version="0.5.9">bwa</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python">bwa_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_indexes"</command> 6 <command interpreter="python">bwa_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_indexes"</command>
7 <stdio>
8 <exit_code range=":-1" />
9 <exit_code range="1:" />
10 </stdio>
7 <inputs> 11 <inputs>
8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> 12 <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
9 <options from_data_table="all_fasta"/> 13 <options from_data_table="all_fasta"/>
10 </param> 14 </param>
11 <param type="text" name="sequence_name" value="" label="Name of sequence" /> 15 <param type="text" name="sequence_name" value="" label="Name of sequence" />