Mercurial > repos > devteam > data_manager_bwa_index_builder
view data_manager_conf.xml @ 1:cc5ae94acf01 draft default tip
planemo upload commit 2b9ef766ea9ee24964464363a9d41faeefa3d360-dirty
author | devteam |
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date | Wed, 26 Aug 2015 11:50:48 -0400 |
parents | 367878cb3698 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/bwa_index_builder.xml" id="bwa_index_builder" version="0.0.1"> <data_table name="bwa_indexes"> <output> <column name="value" /> <column name="dbkey" /> <column name="name" /> <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> <data_manager tool_file="data_manager/bwa_color_space_index_builder.xml" id="bwa_color_space_index_builder" version="0.0.1"> <data_table name="bwa_indexes_color"> <output> <column name="value" /> <column name="dbkey" /> <column name="name" /> <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}/color</target> <!-- confirm this as preferred location --> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/color/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>