Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy

comparison data_manager/ncbi_taxonomy_fetcher.xml @ 7:34a5799a65fa draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit a54e50916ebdb0858b049cdc549a43df801e1a71
author iuc
date Tue, 21 May 2024 07:36:09 +0000
parents 6dd9e00dea95
children
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6:6dd9e00dea95 7:34a5799a65fa
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.3"> 2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.4" profile="23.0">
3 <description>taxonomy downloader</description> 3 <description>taxonomy downloader</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.7">python</requirement> 5 <requirement type="package" version="3.7">python</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"> 7 <command detect_errors="exit_code">
27 <data name="out_file" format="data_manager_json" /> 27 <data name="out_file" format="data_manager_json" />
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <param name="database_name" value="tax_name"/> 31 <param name="database_name" value="tax_name"/>
32 <param name="database_id" value="tax_id"/>
33 <output name="out_file" value="taxonomy.json"/> 32 <output name="out_file" value="taxonomy.json"/>
34 </test> 33 </test>
35 <test> 34 <test>
36 <param name="database_name" value="tax_name"/> 35 <param name="database_name" value="tax_name"/>
37 <param name="database_id" value="tax_id"/>
38 <param name="name_maps" value="true"/> 36 <param name="name_maps" value="true"/>
39 <param name="partial_data" value="--partial"/> 37 <param name="partial_data" value="--partial"/>
40 <output name="out_file" value="taxonomy_with_accession2taxid.json"/> 38 <output name="out_file" value="taxonomy_with_accession2taxid.json"/>
41 </test> 39 </test>
42 </tests> 40 </tests>