Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy

comparison data_manager/ncbi_taxonomy_fetcher.xml @ 2:4af4e175db0d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 04825a097d217d30deb5fcb6906fe718023e25b6"
author iuc
date Tue, 28 Apr 2020 03:57:59 -0400
parents 926847693e4d
children bdd8632fa9fb
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1:926847693e4d 2:4af4e175db0d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0"> 2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.1">
3 <description>taxonomy downloader</description> 3 <description>taxonomy downloader</description>
4 <command detect_errors="exit_code"> 4 <command detect_errors="exit_code">
5 <![CDATA[ 5 <![CDATA[
6 python '$__tool_directory__/data_manager.py' --out '${out_file}' 6 python '$__tool_directory__/data_manager.py' --out '${out_file}'
7 #if $taxonomy_url: 7 #if $taxonomy_url:
12 #end if 12 #end if
13 ]]> 13 ]]>
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" /> 16 <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" />
17 <param name="taxonomy_url" type="text" label="Enter URL for taxonomy files" /> 17 <param name="taxonomy_url" type="text" value='ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz' label="Enter URL for taxonomy files" />
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data name="out_file" format="data_manager_json" /> 20 <data name="out_file" format="data_manager_json" />
21 </outputs> 21 </outputs>
22 </tool> 22 </tool>