Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy

comparison data_manager_conf.xml @ 6:6dd9e00dea95 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
author iuc
date Fri, 19 Mar 2021 21:43:42 +0000
parents fafcd2f5db36
children
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5:9de2fb1ce1fb 6:6dd9e00dea95
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/ncbi_taxonomy_fetcher.xml" id="ncbi_taxonomy_fetcher" version="1.0.0"> 3 <data_manager tool_file="data_manager/ncbi_taxonomy_fetcher.xml" id="ncbi_taxonomy_fetcher" version="1.0.3">
4 <data_table name="ncbi_taxonomy"> 4 <data_table name="ncbi_taxonomy">
5 <output> 5 <output>
6 <column name="value" /> 6 <column name="value" />
7 <column name="name" /> 7 <column name="name" />
8 <column name="path" output_ref="out_file"> 8 <column name="path" output_ref="out_file">
9 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
10 <source>${path}/taxonomy</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_taxonomy/${value}</target> 11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_taxonomy/${value}</target>
11 </move> 12 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ncbi_taxonomy/${value}</value_translation> 13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ncbi_taxonomy/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation> 14 <value_translation type="function">abspath</value_translation>
14 </column> 15 </column>
15 </output> 16 </output>
16 </data_table> 17 </data_table>
18 <data_table name="ncbi_accession2taxid">
19 <output>
20 <column name="value" />
21 <column name="name" />
22 <column name="path" output_ref="out_file">
23 <move type="directory" relativize_symlinks="True">
24 <source>${path}/accession2taxid</source>
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_accession2taxid/${value}</target>
26 </move>
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ncbi_accession2taxid/${value}</value_translation>
28 <value_translation type="function">abspath</value_translation>
29 </column>
30 </output>
31 </data_table>
17 </data_manager> 32 </data_manager>
18 </data_managers> 33 </data_managers>