Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy

diff data_manager/ncbi_taxonomy_fetcher.xml @ 5:9de2fb1ce1fb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:48:48 +0000
parents d6acd5cd497b
children 6dd9e00dea95
line wrap: on
line diff
--- a/data_manager/ncbi_taxonomy_fetcher.xml	Mon Jul 06 20:06:21 2020 -0400
+++ b/data_manager/ncbi_taxonomy_fetcher.xml	Sun Nov 22 12:48:48 2020 +0000
@@ -1,6 +1,9 @@
 <?xml version="1.0"?>
-<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.1">
+<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.2">
     <description>taxonomy downloader</description>
+    <requirements>
+        <requirement type="package" version="3.7">python</requirement>
+    </requirements>
     <command detect_errors="exit_code">
     <![CDATA[
         python '$__tool_directory__/data_manager.py' --out '${out_file}'
@@ -19,4 +22,15 @@
     <outputs>
         <data name="out_file" format="data_manager_json" />
     </outputs>
+    <tests>
+        <test>
+            <param name="database_name" value="tax_name"/>
+            <param name="database_id" value="tax_id"/>
+            <output name="out_file" value="taxonomy.json"/>
+        </test>
+    </tests>
+    <help>
+        Download a taxonomy dump from a provided URL.
+        The default URL is the latest dump from NCBI taxonomy.
+    </help>
 </tool>