Mercurial > repos > devteam > data_manager_picard_index_builder
changeset 2:b99040168706 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 59ee07d9786f1a090053b4a13192247872389d61
| author | iuc |
|---|---|
| date | Mon, 10 Apr 2017 06:06:23 -0400 |
| parents | dc28cd6a1d44 |
| children | ae080ff506fd |
| files | data_manager/picard_index_builder.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/data_manager/picard_index_builder.py Tue Apr 04 18:12:10 2017 -0400 +++ b/data_manager/picard_index_builder.py Mon Apr 10 06:06:23 2017 -0400 @@ -31,7 +31,7 @@ prefix = os.path.splitext( fasta_base_name )[0] sym_linked_fasta_filename = os.path.join( target_directory, fasta_base_name ) os.symlink( fasta_filename, sym_linked_fasta_filename ) - args = [ 'java', '-Xmx4G', '-jar', os.path.join( os.environ[ 'JAVA_JAR_PATH' ], 'CreateSequenceDictionary.jar' ), 'R=%s' % sym_linked_fasta_filename, 'O=%s.dict' % prefix ] + args = [ 'picard', 'CreateSequenceDictionary', 'R=%s' % sym_linked_fasta_filename, 'O=%s.dict' % prefix ] proc = subprocess.Popen( args=args, shell=False, cwd=target_directory ) return_code = proc.wait() if return_code: