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comparison data_manager/data_manager_rsync.xml @ 2:e0329ab30f6d draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_rsync_g2 commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:47:47 -0500
parents 8ff92bd7e2a3
children
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1:8ff92bd7e2a3 2:e0329ab30f6d
1 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data"> 1 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.3" tool_type="manage_data" profile="19.05">
2 <options sanitize="False" /> 2 <options sanitize="False" />
3 <description>fetching</description> 3 <description>fetching</description>
4 <requirements>
5 <requirement type="package" version="3.7">python</requirement>
6 <requirement type="package" version="3.1.3">rsync</requirement>
7 </requirements>
4 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
5 python '$__tool_directory__/data_manager_rsync.py' 9 python '$__tool_directory__/data_manager_rsync.py'
6 '${out_file}' 10 '${out_file}'
7 ]]></command> 11 ]]></command>
8 <inputs> 12 <inputs>
9 <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/> 13 <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all" refresh_on_change="True"/>
10 14
11 <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" refresh_on_change="dbkey" 15 <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" refresh_on_change="True"
12 label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" /> 16 label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" />
13 17
14 <param name="data_table_entries" type="select" display="checkboxes" multiple="true" optional="false" refresh_on_change="dbkey" 18 <param name="data_table_entries" type="select" display="checkboxes" multiple="true" optional="false"
15 label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )" /> 19 label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )" />
16 </inputs> 20 </inputs>
17 <outputs> 21 <outputs>
18 <data name="out_file" format="data_manager_json" dbkey="dbkey"/> 22 <data name="out_file" format="data_manager_json" dbkey="dbkey"/>
19 </outputs> 23 </outputs>
20 <tests> 24 <tests>
21 <test> 25 <test>
22 <param name="dbkey" value="sacCer2"/> 26 <param name="dbkey" value="sacCer2"/>
23 <param name="data_table_names" value="all_fasta"/> 27 <param name="data_table_names" value="all_fasta"/>
24 <param name="data_table_entries" value="eyJlbnRyeSI6IHsicGF0aCI6ICIvZ2FsYXh5L2RhdGEvc2FjQ2VyMi9zZXEvc2FjQ2VyMi5mYSIs ICJkYmtleSI6ICJzYWNDZXIyIiwgInZhbHVlIjogInNhY0NlcjIiLCAibmFtZSI6ICJZZWFzdCAo U2FjY2hhcm9teWNlcyBjZXJldmlzaWFlKTogc2FjQ2VyMiJ9LCAibmFtZSI6ICJhbGxfZmFzdGEi fQ=="/> 28 <param name="data_table_entries" value="eyJlbnRyeSI6IHsiZGJrZXkiOiAic2FjQ2VyMiIsICJuYW1lIjogIlllYXN0IChTYWNjaGFyb215Y2VzIGNlcmV2aXNpYWUpOiBzYWNDZXIyIiwgInBhdGgiOiAiL2N2bWZzL2RhdGEuZ2FsYXh5cHJvamVjdC5vcmcvYnloYW5kL3NhY0NlcjIvc2VxL3NhY0NlcjIuZmEiLCAidmFsdWUiOiAic2FjQ2VyMiJ9LCAibmFtZSI6ICJhbGxfZmFzdGEifQ=="/>
25 <output name="out_file" file="sacCer2_rsync_all_fasta.data_manager_json"/> 29 <output name="out_file" file="sacCer2_rsync_all_fasta.data_manager_json"/>
26 </test> 30 </test>
27 </tests> 31 </tests>
28 <help> 32 <help>
29 **What it does** 33 **What it does**