Mercurial > repos > devteam > data_manager_sam_fasta_index_builder

comparison data_manager/data_manager_sam_fasta_index_builder.xml @ 5:cc4ef4d38cf9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 72fb3d356a87d2b555572486e7901449c3bdb568"
author iuc
date Mon, 18 Nov 2019 15:07:34 -0500
parents 1865e693d8b2
children f8418a1bf7d0
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4:1865e693d8b2 5:cc4ef4d38cf9
1 <tool id="sam_fasta_index_builder" name="SAM FASTA index" tool_type="manage_data" version="0.0.2"> 1 <tool id="sam_fasta_index_builder" name="SAM FASTA index" tool_type="manage_data" version="0.0.3" profile="19.05">
2 <description>builder</description> 2 <description>builder</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.5">samtools</requirement> 4 <requirement type="package" version="1.9">samtools</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/data_manager_sam_fasta_index_builder.py' 7 python '$__tool_directory__/data_manager_sam_fasta_index_builder.py'
8 '${out_file}' 8 '${out_file}'
9 --fasta_filename '${all_fasta_source.fields.path}' 9 --fasta_filename '${all_fasta_source.fields.path}'
19 <param name="sequence_id" type="text" value="" label="ID for sequence" /> 19 <param name="sequence_id" type="text" value="" label="ID for sequence" />
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data name="out_file" format="data_manager_json"/> 22 <data name="out_file" format="data_manager_json"/>
23 </outputs> 23 </outputs>
24 <tests>
25 <test>
26 <param name="all_fasta_source" value="phiX174"/>
27 <output name="out_file" value="sam_fasta_data_manager.json"/>"
28 </test>
29 </tests>
24 30
25 <help> 31 <help>
26 .. class:: infomark 32 .. class:: infomark
27 33
28 **Notice:** If you leave name, description, or id blank, it will be generated automatically. 34 **Notice:** If you leave name, description, or id blank, it will be generated automatically.