Mercurial > repos > devteam > data_manager_twobit_builder
diff data_manager_conf.xml @ 0:74b09c8e5f6e draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
| author | devteam |
|---|---|
| date | Thu, 11 Jun 2015 16:14:27 -0400 |
| parents | |
| children | df883cc67fbd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Thu Jun 11 16:14:27 2015 -0400 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<data_managers> + + <data_manager tool_file="data_manager/twobit_builder.xml" id="twobit_builder" version="0.0.1"> + <data_table name="lastz_seqs"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file" > + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/seq/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation> + </column> + </output> + </data_table> + + <data_table name="twobit"> + <output> + <column name="value" /> + <column name="path" output_ref="out_file" ><!-- move happens above --> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation> + </column> + </output> + </data_table> + + <data_table name="alignseq_seq"> + <output> + <column name="type" /><!-- always seq --> + <column name="value" /><!-- also dbkey --> + <column name="path" output_ref="out_file" ><!-- move happens above --> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation> + </column> + </output> + </data_table> + + </data_manager> + +</data_managers>