Mercurial > repos > devteam > data_manager_twobit_builder
view test-data/lastz_seqs.loc @ 4:16c0c73b28ad draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author | iuc |
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date | Thu, 28 Nov 2019 15:49:13 -0500 |
parents | 5c77d4091880 |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of 2bit genome files for use with Lastz. You will #need to supply these files and then create a lastz_seqs.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The lastz_seqs.loc #file has this format (white space characters are TAB characters): # #<unique_build_id> <display_name> <file_path> # #So, for example, if your lastz_seqs.loc began like this: # #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit # #then your /depot/data2/galaxy/twobit/ directory #would need to contain the following 2bit files: # #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit # #Your lastz_seqs.loc file should include an entry per line for #each file you have stored that you want to be available. Note that #your files should all have the extension '2bit'. # #Note that for backwards compatibility with workflows, the unique ID of #an entry must be the path that was in the original loc file, because that #is the value stored in the workflow for that parameter. #