Mercurial > repos > devteam > dwt_var_perclass

comparison execute_dwt_var_perClass.xml @ 1:781e68074f84 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_var_perclass commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author devteam
date Mon, 06 Jul 2020 20:34:10 -0400
parents cb422b6f49d2
children
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0:cb422b6f49d2 1:781e68074f84
1 <tool id="compute_p-values_max_variances_feature_occurrences_in_one_dataset_using_discrete_wavelet_transfom" name="Compute P-values and Max Variances for Feature Occurrences" version="1.0.0"> 1 <tool id="compute_p-values_max_variances_feature_occurrences_in_one_dataset_using_discrete_wavelet_transfom" name="Compute P-values and Max Variances for Feature Occurrences" version="1.0.1">
2 <description>in one dataset using Discrete Wavelet Transfoms</description> 2 <description>in one dataset using Discrete Wavelet Transfoms</description>
3 3 <requirements>
4 <command interpreter="perl"> 4 <requirement type="package" version="1.7.5">r-waveslim</requirement>
5 execute_dwt_var_perClass.pl $inputFile $outputFile1 $outputFile2 $outputFile3 5 <requirement type="package" version="4.6.8">r-wavethresh</requirement>
6 </requirements>
7 <command detect_errors="exit_code">
8 Rscript --vanilla '$__tool_directory__/execute_dwt_var_perClass.R'
9 '$inputFile'
10 '$outputFile1'
11 '$outputFile2'
12 '$outputFile3'
6 </command> 13 </command>
7
8 <inputs> 14 <inputs>
9 <param format="tabular" name="inputFile" type="data" label="Select the input file"/> 15 <param format="tabular" name="inputFile" type="data" label="Select the input file"/>
10 </inputs> 16 </inputs>
11
12 <outputs> 17 <outputs>
13 <data format="tabular" name="outputFile1"/> 18 <data format="tabular" name="outputFile1" label="${tool.name} on ${on_string}: scales"/>
14 <data format="tabular" name="outputFile2"/> 19 <data format="tabular" name="outputFile2" label="${tool.name} on ${on_string}: statistics"/>
15 <data format="pdf" name="outputFile3"/> 20 <data format="pdf" name="outputFile3" label="${tool.name} on ${on_string}: pdf"/>
16 </outputs> 21 </outputs>
17 22 <tests>
23 <test>
24 <param ftype="tabular" name="inputFile" value="in.tsv"/>
25 <output name="outputFile1" ftype="tabular">
26 <assert_contents><has_line_matching expression="^max_var\tscale.*"/></assert_contents>
27 <assert_contents><has_line_matching expression="^translinTarget.*" /></assert_contents>
28 </output>
29 <output name="outputFile2" ftype="tabular">
30 <assert_contents><has_line_matching expression="^motif\t1_var.*"/></assert_contents>
31 <assert_contents><has_line_matching expression="^translinTarget.*" /></assert_contents>
32 </output>
33 <output name="outputFile3" ftype="pdf" file="out.pdf" compare="sim_size"/>
34 </test>
35 </tests>
18 <help> 36 <help>
19 37
20 .. class:: infomark 38 .. class:: infomark
21 39
22 **What it does** 40 **What it does**