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comparison emboss_dreg.xml @ 17:ce385837c160 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 4812c313fd8762b11f7fd002436e3a93b4c67f00"
author iuc
date Fri, 20 Nov 2020 16:51:11 +0000
parents 8992d258e42f
children
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16:dba489bfcd62 17:ce385837c160
1 <tool id="EMBOSS: dreg27" name="dreg" version="@VERSION@"> 1 <tool id="EMBOSS: dreg27" name="dreg" version="@VERSION@+galaxy1">
2 <description>Regular expression search of a nucleotide sequence</description> 2 <description>Regular expression search of a nucleotide sequence</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command>dreg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command> 7 <command>dreg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command>
8 <inputs> 8 <inputs>
9 <param name="input1" type="data" format="data" label="Sequence 1" /> 9 <param name="input1" type="data" format="data" label="Sequence 1" />
10 <param name="pattern" type="text" value="(AUG)" label="Regular expression pattern" /> 10 <param name="pattern" type="text" value="(AUG)" label="Regular expression pattern">
11 <expand macro="regex_sanitizer"/>
12 </param>
11 </inputs> 13 </inputs>
12 <outputs> 14 <outputs>
13 <data name="out_file1" format="dreg" /> 15 <data name="out_file1" format="dreg" />
14 </outputs> 16 </outputs>
15 <!-- tests not possible since dreg timestamps output file --> 17 <tests>
18 <test>
19 <param name="input1" ftype="fasta" value="2.fasta"/>
20 <param name="pattern" value="g[atcg]ctct{2,2}gcc"/>
21 <output name="out_file1" value="dreg.seqtable" lines_diff="8"/>
22 </test>
23 </tests>
16 <help> 24 <help>
17 You can view the original documentation here_. 25 You can view the original documentation here_.
18 26
19 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dreg.html 27 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dreg.html
20 </help> 28 </help>