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comparison emboss_cpgplot.xml @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: cpgplot15" name="cpgplot" version="5.0.0">
2 <description>Plot CpG rich areas</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <code file="emboss_format_corrector.py" />
8 <command>perl '$__tool_directory__/emboss_cpgplot_wrapper.pl' cpgplot -sequence '$input1' -window $window -minlen $minlen -minpc $minpc -outfile '$outfile' -graph png -goutfile '$goutfile' -outfeat '$outfeat' -minoe $minoe -auto</command>
9 <inputs>
10 <param name="input1" type="data" format="data" label="On query" />
11 <param name="window" type="integer" value="100" label="Window size" />
12 <param name="minlen" type="integer" value="200" label="Minimum length" />
13 <param name="minoe" type="float" value="0.6" label="Minimum average observed to expected ratio" />
14 <param name="minpc" type="float" value="50.0" label="Minimum average percentage of G plus C" />
15 </inputs>
16 <outputs>
17 <data name="outfile" format="cpgplot" />
18 <data name="goutfile" format="png" />
19 <data name="outfeat" format="gff" />
20 </outputs>
21 <help>
22 You can view the original documentation here_.
23
24 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/cpgplot.html
25 </help>
26 <expand macro="citations" />
27 </tool>