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comparison emboss_dotmatcher.xml @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: dotmatcher24" name="dotmatcher" version="5.0.0.1">
2 <description>Displays a thresholded dotplot of two sequences</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' dotmatcher -asequence '$input1' -bsequence '$input2' -goutfile '$out_file1' -windowsize $windowsize -threshold $threshold -graph png -xygraph png -auto</command>
8 <inputs>
9 <param name="input1" type="data" format="data" label="Sequence 1" />
10 <param name="input2" type="data" format="data" label="Sequence 2" />
11 <param name="windowsize" type="integer" value="10" label="Window size" />
12 <param name="threshold" type="integer" value="23" label="Threshold" />
13 </inputs>
14 <outputs>
15 <data name="out_file1" format="png" />
16 </outputs>
17 <!-- functional tests not possible since image output contains file name information and timestamp -->
18 <help>
19 You can view the original documentation here_.
20
21 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dotmatcher.html
22 </help>
23 <expand macro="citations" />
24 </tool>